Table 1 Table summarizing clinical features, variants, and testing results for patients with a clinical phenotype of a STS.
Case no. | Age/sex | Clinical features | Significant family history (yes/no)a | FlowFISH TL (centile length in granulocytes/ lymphocytes) | Gene | cDNA change | Protein change | Protein region | In silico predictions (SIFT/PolyPhen) | CADD score | 3D model prediction | Conclusion from TRAP assay | ACMG classification (at the clinical report/after research testing) |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1b | 23/M | Premature graying of hair, macrocytosis, thrombocytopenia, bilateral hip avascular necrosis | Yes | <1st/<1st | TERT | c.2768 C > T | p.Pro923Leu | Reverse-transcriptase domain | Deleterious/probably damaging | 24.2 | Destabilizes structure | NA | Pathogenic/pathogenic |
2 | 69/F | Premature graying of hair, IPF, anemia, leukopenia | No | 10th/10th | TERT | c.3362 C > T | p.Pro1121Leu | C-terminal extension | Deleterious/probably damaging | 22.9 | Destabilizes structure | Absent telomerase function | VUS/likely pathogenic |
3 | 27/F | Macrocytosis, neutropenia | No | <1st/1st | TERT | c.1765A > C | p.Ile589Leu | None described | Tolerated/benign | 5.08 | Neutral | Decreased telomerase function | VUS/likely pathogenic |
4 | 19/M | Macrocytosis | No | <1st/<1st | TERT | c.1885G > A | p.Gly629Arg | Reverse-transcriptase domain | Deleterious/probably damaging | 23.1 | NA | Decreased telomerase function | VUS/pathogenic |
5 | 47/M | IPF, pancytopenia | No | <1st/<1st | TERC | n.238 G > C | NA | NA | NA | NA | Changes TERC organization | NA | VUS/pathogenic |