Table 1 Table summarizing clinical features, variants, and testing results for patients with a clinical phenotype of a STS.

From: Functional validation of TERT and TERC variants of uncertain significance in patients with short telomere syndromes

Case no.

Age/sex

Clinical features

Significant family history (yes/no)a

FlowFISH TL (centile length in granulocytes/ lymphocytes)

Gene

cDNA change

Protein change

Protein region

In silico predictions (SIFT/PolyPhen)

CADD score

3D model prediction

Conclusion from TRAP assay

ACMG classification (at the clinical report/after research testing)

1b

23/M

Premature graying of hair, macrocytosis, thrombocytopenia, bilateral hip avascular necrosis

Yes

<1st/<1st

TERT

c.2768 C > T

p.Pro923Leu

Reverse-transcriptase domain

Deleterious/probably damaging

24.2

Destabilizes structure

NA

Pathogenic/pathogenic

2

69/F

Premature graying of hair, IPF, anemia, leukopenia

No

10th/10th

TERT

c.3362 C > T

p.Pro1121Leu

C-terminal extension

Deleterious/probably damaging

22.9

Destabilizes structure

Absent telomerase function

VUS/likely pathogenic

3

27/F

Macrocytosis, neutropenia

No

<1st/1st

TERT

c.1765A > C

p.Ile589Leu

None described

Tolerated/benign

5.08

Neutral

Decreased telomerase function

VUS/likely pathogenic

4

19/M

Macrocytosis

No

<1st/<1st

TERT

c.1885G > A

p.Gly629Arg

Reverse-transcriptase domain

Deleterious/probably damaging

23.1

NA

Decreased telomerase function

VUS/pathogenic

5

47/M

IPF, pancytopenia

No

<1st/<1st

TERC

n.238 G > C

NA

NA

NA

NA

Changes TERC organization

NA

VUS/pathogenic

  1. FISH fluorescence in situ hybridization, IPF idiopathic pulmonary fibrosis, NA not applicable, STS short telomere syndrome, TL telomere length, TRAP telomerase repeated amplification protocol.
  2. aSignificant family history was defined as the presence of one or more first- or second-degree relatives with one or more clinical features characteristic of STSs, such as premature onset of hair graying (age < 30 years), IPF, cryptogenic cirrhosis or nodular regenerative hyperplasia, or unexplained cytopenias.
  3. bClinical history of this case were previously published; however, functional testing results are new.