Table 3 Verification of CNV analysis by CytoSNP-850K v1.1 arrays.
From: DNA methylation and copy number variation profiling of T-cell lymphoblastic leukemia and lymphoma
CNV Ch 13q14.2 analysis | |||||||
|---|---|---|---|---|---|---|---|
Sample ID | HumMeth450K array | CytoSNP-850K v1.1 array | |||||
Start | End | Deletion (yes/no) | Start | End | Deletion (yes/no) | Genotype | |
T-LBL 1 | 38,900,001 | 54,850,000 | Yes | 40,021,077 | 46,802,657 | Yes | Heterozygous |
T-LBL 2 | 40,250,001 | 56,200,000 | Yes | 40,363,878 | 59,634,447 | Yes | Heterozygous |
48,902,121 | 50,698,153 | Yes | Homozygous | ||||
T-LBL 3 | 46,950,001 | 88,350,000 | Yes | 46,893,680 | 88,924,926 | Yes | Heterozygous |
48,985,639 | 49,072,565 | Yes | Homozygous | ||||
84,559,815 | 84,705,359 | Yes | Homozygous | ||||
T-LBL 4a | – | – | NA | – | – | No | – |
T-LBL 5 | – | – | No | – | – | No | – |
T-LBL 6 | – | – | No | – | – | No | – |
T-LBL 7 | 30,400,001 | 51,500,000 | Yes | 29,499,142 | 51,21,608 | Yes | Heterozygous |
T-LBL 8 | 31,800,001 | 60,000,000 | Yes | 31,926,477 | 58,586,236 | Yes | Heterozygous |
T-LBL 9 | – | – | No | – | – | No | – |
T-LBL 10 | – | – | No | – | – | No | – |
T-LBL 11 | – | – | No | – | – | No | – |
T-LBL 12 | – | – | No | – | – | No | – |
T-LBL 13 | – | – | No | – | – | No | – |
T-LBL 14 | – | – | No | – | – | No | – |
T-LBL 15 | – | – | No | – | – | No | – |
