Table 2 Clinico-pathological parameters and SHOX2 and SEPT9 methylation levels prior to treatment

From: Potential of quantitative SEPT9 and SHOX2 methylation in plasmatic circulating cell-free DNA as auxiliary staging parameter in colorectal cancer: a prospective observational cohort study

Clinico-pathological parameters

Total number (n)

Methylation in plasma prior to treatment

  

Number (n)

Median SEPT9 (%); IQR

Spearman’s ρ, P-valuea

Median SHOX2 (%); IQR

Spearman’s ρ, P-valuea

All CRC cases

184 (100%)

155 (100%)

    

Localisation

 Caecum

34 (18.5%)

33 (21.3%)

0.061; 0.37

 

0.072; 0.19

 

 Ascending colon

33 (17.9%)

30 (19.4%)

0.031; 0.25

 

0.036; 0.15

 

 Transverse colon

13 (7.1%)

8 (5.2%)

0.009; 0.08

 

0.009; 0.05

 

 Descending colon

10 (5.4%)

9 (5.8%)

0.155; 21.87

 

0.013; 7.99

 

 Sigmoid colon

44 (23.9%)

39 (25.2%)

0.055; 0.47

 

0.033; 0.12

 

 Rectum

43 (23.4%)

30 (19.4%)

0.161; 0.74

P = 0.52

0.068; 0.25

P = 0.40

 Othersc

7 (3.8%)

6 (3.9%)

0.616; 2.99

 

0.156; 0.35

 

Primary tumour (T) category

Tis

1 (0.5%)

0 (0.0%)

N/A

 

N/A

 

T1

14 (7.6%)

8 (5.2%)

0.000; 0.01

 

0.029; 0.10

 

T2

30 (16.3%)

27 (17.4%)

0.016; 0.19

 

0.014; 0.09

 

T3

103 (56.0%)

92 (59.3%)

0.123; 0.65

ρ = 0.28

0.044; 0.21

ρ = 0.25

T4

30 (16.3%)

24 (15.5%)

0.188; 0.80

P < 0.001

0.131; 0.21

P = 0.002

 N/Ab

6 (3.3%)

4 (2.6%)

0.413;0.58

 

0.023; 0.07

 

Regional node (N) category

N0

97 (52.7%)

89 (57.4%)

0.037; 0.25

 

0.032; 0.10

 

N1

41 (22.3%)

36 (23.2%)

0.150; 0.59

ρ = 0.28

0.071; 0.27

ρ = 0.29

N2

27 (14.7%)

25 (16.1%)

0.393; 4.22

P = 0.001

0.171; 1.16

P < 0.001

Nx

19 (10.3%)

5 (3.2%)

0.109; 0.63

 

0.000; 0.05

 

Distant metastasis (M) category

M0

159 (86.4%)

132 (85.2%)

0.049; 0.28

 

0.037; 0.14

 

M1a

18 (9.8%)

16 (10.3%)

2.231; 4.18

 

0.296; 1.36

 

M1b

7 (3.8%)

7 (4.5%)

0.393; 10.64

P < 0.001

0.121; 1.25

P = 0.001

Histopathological grade

G1

9 (4.9%)

9 (5.8%)

0.000; 0.10

 

0.017; 0.05

 

G2

134 (72.8%)

117 (75.5%)

0.055; 0.35

ρ = 0.32

0.049; 0.14

ρ = 0.26

G3

28 (15.2%)

23 (14.8%)

0.661; 4.45

P < 0.001

0.184; 1.28

P = 0.001

 N/Ab

13 (7.1%)

6 (3.9%)

0.074; 28.79

 

0.164; 13.89

 

Lymphatic invasion (L)

L0

121 (65.8%)

102 (65.8%)

0.041; 0.25

 

0.037; 0.12

 

L1

53 (28.8%)

46 (29.7%)

0.215; 1.12

P = 0.005

0.092; 0.29

P = 0.033

 N/Ab

10 (5.4%)

7 (4.5%)

0.319; 24.01

 

0.228; 10.30

 

Vascular invasion (V)

V0

158 (85.9%)

134 (86.5%)

0.071; 0.53

 

0.043; 0.16

 

V1

13 (7.1%)

11 (7.1%)

0.184; 0.39

P = 0.86

0.079; 0.18

P = 0.20

 N/Ab

13 (7.1%)

10 (6.4%)

0.090; 7.39

 

0.050; 3.18

 

Surgical margin (R)

R0

175 (95.1%)

148 (95.5%)

0.071; 0.47

 

0.049; 0.16

 

R1

6 (3.3%)

4 (2.6%)

0.214; 1.61

P = 0.66

0.126; 0.74

P = 0.38

R2

0 (0.0%)

0 (0.0%)

N/A

 

N/A

 

 N/Ab

3 (1.6%)

3 (1.9%)

24.036; N/A

 

10.301; N/A

 

UICC stage

 I

37 (20.1%)

29 (18.7%)

0.000; 0.04

 

0.008; 0.08

 

 II

64 (34.8%)

58 (37.4%)

0.083; 0.31

 

0.034; 0.16

 

 III

48 (26.1%)

43 (27.7%)

0.125; 0.56

ρ = 0.41

0.078; 0.22

ρ = 0.32

 IV

25 (13.6%)

23 (14.8%)

1.845; 4.34

P < 0.001

0.171; 1.25

P < 0.001

 N/Ab

10 (5.4%)

2 (1.3%)

0.104; N/A

 

0.023; N/A

 

Extracapsular lymph node extension (ece)

ece−/N0

129 (70.1%)

106 (68.4%)

0.041; 0.25

 

0.034; 0.13

 

ece+

31 (16.8%)

26 (16.8%)

0.606; 3.24

 

0.143; 0.48

 

N/Ab

24 (13.0%)

23 (14.8%)

0.180; 1.82

P = 0.001

0.049; 0.80

P = 0.016

  1. Clinico-pathological parameters of the CRC patient cohort (184 patients) and association with SHOX2 and SEPT9 plasma DNA methylation levels prior to treatment. Methylation levels prior to treatment were available for 155/184 patients.
  2. aP-values refer to the following tests: Wilcoxon–Mann–Whitney U test (R0 vs. R1,2; L0 vs. L1; V0 vs. V1; M0 vs. M1a,1b; ece+ vs. ece−), Spearman’s rank correlation (T category, N category, UICC stage, G), ANOVA (tumour localisation),
  3. bN/A data not available.
  4. cOthers (descending and sigmoid colon, rectosigmoid transition)