Table 2 Univariate analysis of genetic alterations and response to pyrotinib combined with trastuzumab (HP) treatment.

From: PIK3CA mutations are associated with pathologic complete response rate to neoadjuvant pyrotinib and trastuzumab plus chemotherapy for HER2-positive breast cancer

Marker

pCR no. (%)

Non-pCR no. (%)

ORa (95% CI)

Pb

Padjustedc

PIK3CA

   

0.00057

0.024

 Wild type

21 (80.8)

5 (19.2)

   

 Mutant

5 (26.3)

14 (73.7)

0.09 (0.02–0.42)

  

TP53

   

0.704

1.000

 Wild type

4 (50.0)

4 (50.0)

   

 Mutant

22 (59.5)

15 (40.5)

1.45 (0.23–9.15)

  

ERBB2

   

1.000

1.000

 Wild type

24 (58.5)

17 (41.5)

   

 Mutant

2 (50.0)

2 (50.0)

0.71 (0.05–10.75)

  

NF1

   

0.627

1.000

 Wild type

23 (56.1)

18 (43.9)

   

 Mutant

3 (75.0)

1 (25.0)

2.31 (0.17–129.9)

  

NBN

   

0.627

1.000

 Wild type

23 (56.1)

18 (43.9)

   

 Mutant

3 (75.0)

1 (25.0)

2.31 (0.17–129.9)

  

ATRX

   

1.000

1.000

 Wild type

24 (58.5)

17 (41.5)

   

 Mutant

2 (50.0)

2 (50.0)

0.71 (0.05–10.75)

  

MYC

   

0.010

0.183

 Neutral

24 (68.6)

11 (31.4)

   

 Amplification

2 (20.0)

8 (80.0)

0.12 (0.01–0.74)

  

ERBB2

   

0.734

1.000

 Neutral

6 (50.0)

6 (50.0)

   

 Amplification

20 (60.6)

13 (39.4)

1.52 (0.33–7.14)

  

CDK12

   

0.686

1.000

 Neutral

23 (59.0)

16 (41.0)

   

 Amplification

3 (50.0)

3 (50.0)

0.70 (0.08–5.92)

  

CCND1

   

0.069

0.412

 Neutral

1 (16.7)

5 (83.3)

   

 Amplification

25 (64.1)

14 (35.9)

0.12 (0.002–1.20)

  

ZNF217

   

1.000

1.000

 Neutral

22 (56.4)

17 (43.6)

   

 Amplification

4 (66.7)

2 (33.3)

1.53 (0.19–18.81)

  
  1. pCR pathologic complete response, OR odds ratio, CI confidence interval.
  2. aThe conditional maximum likelihood estimate (MLE) of odds ratio was used.
  3. bP value was calculated by Fisher’s exact test.
  4. cAdjusted P value for multiple comparisons by the Benjamini–Hochberg method.