Table 3 Multivariate logistic regression model of the treatment response for selected variables.

From: PIK3CA mutations are associated with pathologic complete response rate to neoadjuvant pyrotinib and trastuzumab plus chemotherapy for HER2-positive breast cancer

Variable

OR (95% CI)

P

AUC (95% CI)

Model 1: Prediction with clinical features

  

0.846 (0.724–0.968)

 HR status (negative vs. positive)

5.52 (1.15–36.40)

0.046

 

 LN status (negative vs. positive)

4.09 (0.65–36.40)

0.148

 

 Clinical stage (III vs. I–II)

0.28 (0.04–1.53)

0.156

 

 HER2 (3+ vs. 2+/FISH+)

4.03 (0.31–120.5)

0.324

 

 TILs (intermediate/high vs. low)

5.10 (0.99–33.52)

0.063

 

Model 2: Prediction with genetic biomarkers

  

0.842 (0.728–0.957)

 PIK3CA (mutant vs. WT)

0.08 (0.01–0.34)

0.0015

 

 MYC (amplification vs. neutral)

0.10 (0.01–0.63)

0.024

 

Model 3: Prediction with combined predictors

  

0.912 (0.827–0.997)

 HR status (negative vs. positive)

2.65 (0.32–26.65)

0.367

 

 LN status (negative vs. positive)

4.42 (0.49–59.21)

0.212

 

 Clinical stage (III vs. I–II)

0.45 (0.04–4.68)

0.502

 

 TILs (intermediate/high vs. low)

6.33 (0.71–91.11)

0.120

 

 HER2 (3+ vs. 2+/FISH+)

10.54 (0.41–648.7)

0.200

 

 PIK3CA (mutant vs. WT)

0.07 (0.01–0.41)

0.007

 

 MYC (amplification vs. neutral)

0.22 (0.02–2.27)

0.211

 
  1. OR odds ratio, CI confidence interval, TILs tumour-infiltrating lymphocytes, WT wild-type, AUC area under curve, HR hormone receptor, LN lymph node.