Fig. 1: The identification of malignant cells in spatial transcriptomics (ST) data. | Cell Death & Disease

Fig. 1: The identification of malignant cells in spatial transcriptomics (ST) data.

From: DKK1+ tumor cells inhibited the infiltration of CCL19+ fibroblasts and plasma cells contributing to worse immunotherapy response in hepatocellular carcinoma

Fig. 1

A The workflow depicting the study design. B Clustering of all spots in patient 4 (p4) into 14 distinct clusters. C Distribution of immune score in the 14 clusters. D Hierarchical clustering assigning all spots in p4, except the reference cluster, into eight clusters. E Bar charts showing the distribution of copy number variation (CNV) score in the nine clusters. F The plot depicted the identified tumor cells in eight tumor samples.

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