Table 1 Primers used for ChIP-qPCR, qRT-PCR, and PCR.
Brca1 ChIP F | ACTTCAAAGGGGGACTTGGT |
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Brca1 ChIP R | TGAGCCACAAGACTCCAATG |
Esr1 ChIP F | TAGATCAGCCTGGGTTAGGG |
Esr1 ChIP R | TGCCTGGAGGCTGTCTCTAT |
Shcbp1 ChIP F | CATCCAAGTTTGCCTTGCTGAT |
Shcbp1 ChIP R | GCGTCAGTACTCGACTAGAGG |
q-Smyd3 F | GCGTTGTTCTCAATGCCGAA |
q-Smyd3 R | GGGCTTTTCATCCATCAGCTT |
q-Psmd9 F | CAGACTGATTCCAACCCGCT |
q-Psmd9 R | AGAGAACGAGGAAACGCCTC |
q-Esr1 F | ATTATGGGGTCTGGTCCTGC |
q-Esr1 R | TCTTTCCGTATGCCGCCTTT |
q-Pgr F | TATGGCGTGCTTACCTGTGG |
q-Pgr R | ACTTACGACCTCCAAGGACCA |
q-Ncoa1 F | CCAGTCCTTCGGCAGATGAG |
q-Ncoa1 R | AGAAGTCCTGAGTCCAGAGGC |
q-Crebbp F | CTGTCCTGTTTGCCTCCCTTT |
q-Crebbp R | AAGTGGCATTCTGTTGCCCT |
q-Arid1b F | CTCCCCTGCGAGTATTCCAG |
q-Arid1b R | TGCCTGTCATAAAACCTCTTTCC |
q-Hist1h2be F | GTACCCGCAGTACCACCTTT |
q-Hist1h2be R | AGTGTGAAACGTTCGGGGTT |
q-Pik3ca F | AAAATGGCGACGACTTACGG |
q-Pik3ca R | CGATGAGACCCACACAGTCC |
q-Chd1l F | AGACCTGCCAGACTATCGCT |
q-Chd1l R | TCCAGTTGCTCAAAACAGACAA |
q-Hmgn2 F | CGCTGTATCCCCGTGCTCA |
q-Hmgn2 R | AGGGGCCTTTTTAGGTTTGGG |
q-Asf1b F | GGTCCTGCTTCATGCATTCT |
q-Asf1b R | TAAGGGCTTAGGATAGAGGTGG |
q-Pcsk6 F | GTACACAGCTCCTTCCATCCAA |
q-Pcsk6 R | GGTCTGCATTGGGACCATCA |
q-Mapk8 F | GTGGAATCAAGCACCTTCACT |
q-Mapk8 R | TCCTCGCCAGTCCAAAATCAA |
q-Shcbp1 F | CTCCATTGAGTTGGAAGGATATGG |
q-Shcbp1 R | TGTGGTCTTGCCATGGTGAAT |
q-Kras F | GCCTATGGTCCTGGTAGGGA |
q-Kras R | ATCGTCAACACCCTGTCTTGT |
q-Src F | CAATGCCAAGGGCCTAAATGT |
q-Src R | TGTTTGGAGTAGTAAGCCACGA |
q-Sos1 F | TGTTCGATTCTGACCACTCGG |
q-Sos1 R | TTAGACATAATCTTGGATGGGGAGG |
q-Grb2 F | GGAAAGATGGCTTCATCCCCA |
q-Grb2 R | TTCCAAACTTGACGGACAGGGA |
q-PD1 F | AGAGCTCGTGGTAACAGAGAGA |
q-PD1 R | CAGGGATACCCACTAGGGCA |
q-Pd-L1 F | ACTTGCTACGGGCGTTTACT |
q-Pd-L1 R | GTCCAGCTCCCGTTCTACAG |
q-Pik3cb F | GGCAGCAAGAGACTGGGAG |
q-Pik3cb R | ACAGCCCCCATTTCAGTCTT |
q-N-Myc F | AAGTCACCTTGTTCCGGTCC |
q-N-Myc R | TTCCCAGGGGCATCAAATGG |
q-CrkL F | TTTGCCGGCCTTGTTAGAGT |
q-CrkL R | TGTGTGAAGGGGAAAAGCCC |
q-Wnt10b F | GGTGGCTGTAACCACGACAT |
q-Wnt10b R | GCCTGACGTTCCATGGCATT |
q-Riz F | CGCTCTGGGCTCATGTAATCA |
q-Riz R | AATCCGAGTCTTGTCGACCG |
q-Ccng1 F | GCCCATGATAATGGCCTCAGA |
q-Ccng1 R | CTCAGTCCAACACACCCAAGA |
q-Cdk2 F | AATCAAGGGCCCGTTTGGAG |
q-Cdk2 R | CAGACCAGAGTGACGTGCAA |
q-Map3k11 F | CTAGTACTCCCCCGGCACT |
q-Map3k11 R | GCAATGCACGTTGGATCAGT |
Mouse Smyd3-sg1-F | CACCGACTGCTCCATCGTATTCAAC |
Mouse Smyd3-sg1-R | AAACGTTGAATACGATGGAGCAGTC |
Mouse Smyd3-sg2-F | CACCGCCCGCACTGCACGCAGTAAG |
Mouse Smyd3-sg2-R | AAACCTTACTGCGTGCAGTGCGGGC |
Mouse Smyd3-sg3-F | CACCGACGCAGCCCGTTTCCCCGGT |
Mouse Smyd3-sg3-R | AAACACCGGGGAAACGGGCTGCGTC |
Human SMYD3-sg1-F | CACCGATACTGTAGTGCTAAGTGTC |
Human SMYD3-sg1-R | AAACGACACTTAGCACTACAGTATC |
Human SMYD3-sg2-F | CACCGCCAGACTCCGTTCGACTTCT |
Human SMYD3-sg2-R | AAACAGAAGTCGAACGGAGTCTGGC |
Human SMYD3-sg3-F | CACCGTTGCATTCCCGCTTGTGGTC |
Human SMYD3-sg3-R | AAACGACCACAAGCGGGAATGCAAC |
Mouse Shcbp1-sg1-F | CACCGCATCCCTGAAGGCGGTCGTA |
Mouse Shcbp1-sg1-R | AAACTACGACCGCCTTCAGGGATGC |
Mouse Shcbp1-sg2-F | CACCGCAAGCCTTACGACCGCCTTC |
Mouse Shcbp1-sg2-R | AAACGAAGGCGGTCGTAAGGCTTGC |
Mouse Shcbp1-sg3-F | CACCGCTCGGTGGAACCATAGCTAT |
Mouse Shcbp1-sg3-R | AAACATAGCTATGGTTCCACCGAGC |
Human SHCBP1-sg1-F | CACCGTGTAGCTACCGTGATAAACC |
Human SHCBP1-sg1-R | AAAC GGTTTATCACGGTAGCTACAC |
Human SHCBP1-sg2-F | CACCGCTGGCACACTAATGTGTTCA |
Human SHCBP1-sg2-R | AAAC TGAACACATTAGTGTGCCAGC |
Human SHCBP1-sg3-F | CACCGATGGCTGACGGGTCGCTGAC |
Human SHCBP1-sg3-R | AAAC GTCAGCGACCCGTCAGCCATC |
Brca1 C1 primer | CGTCTTGTGATGTGGGACTG |
Brca1 C2 primer | CCTCACATAGGTAGAAGCTG |