Fig. 2: Dimension reduction (t-SNE) and partner of multiedge node pair analysis. | Cell Death Discovery

Fig. 2: Dimension reduction (t-SNE) and partner of multiedge node pair analysis.

From: Temporal transcriptome analysis of neuronal commitment reveals the preeminent role of the divergent lncRNA biotype and a critical candidate gene during differentiation

Fig. 2

a t-SNE analysis of XH biotype showing that the formation of the cluster is maximum at D7. None of the other biotypes showed any clustering by t-SNE at different days of differentiation (Supplementary Figs. S2, S3). Different colors represent genes at different days of cortical neuronal differentiation. b Estimation of a change in the network by multiedge node pair analysis of biotypes (IG, XH, and XI) from D0 to D7. c Hierarchal clustering of XH lncRNA biotypes during cortical neuronal differentiation. Heatmap showing expression of 160 XH lncRNA-associated genes during cortical development. Red arrow showing the position of BASP1 gene and its expression during all the stages of cortical neuronal differentiation.

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