Table 1 Properties of the examined cell lines, TTFields treatment conditions, cellular cytotoxic response to TTFields, and the different transcriptomics methods employed for each dataset.
From: The transcriptomic fingerprint of cancer response to Tumor Treating Fields (TTFields)
Tumor type (abbreviation) | Cell line | Tumor origin | Donor sex | Growth mode | Doubling time [h] | TTFields treatment | Transcriptomics method | Ref | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Frequency [kHz] | Intensity [V/cm RMS] | Duration [h] | Cell count [% of control] | |||||||||
24 h | 48 h | |||||||||||
Gastric cancer (GasC) | AGS | Primary | Female | Adherent | 32 | 150 | 1.7 | 24, 48 | 74 | 30 | PolyA RNA-seq with Unique Molecular Identifiers (UMI) | b |
KATOIII | Metastatic | Male | Adherent | 27 | 85 | 61 | ||||||
Pancreatic cancer (PanC) | AsPC1 | Primary | Female | Adherent | 33 | 150 | 79 | 62 | ||||
BxPC3 | Metastatic | Female | Adherent | 45 | 72 | 49 | ||||||
Ovarian cancer (OvaC) | OVCAR3 | Metastatic | Female | Adherent | 54 | 200 | 64 | 41 | ||||
Non-small cell lung carcinoma (NSCLC) | A549 | Primary | Male | Adherent | 22 | 150 a | 1.5 | 12, 24, 48 | 88 | 47 | Illumina Whole Genome HumanWG6 v4 Expression BeadChips | [18] |
H1299 | Metastatic | Male | Adherent | 20 | 83 | 75 | ||||||
H157 | N/A | Male | Adherent | 36 | 96 | 33 | ||||||
H1650 | Metastatic | Male | Adherent | 26 | 95 | 84 | ||||||
HCC4006 | Metastatic | Male | Adherent | 34 | 106 | 87 | ||||||
Pleural Mesothelioma (Meso) | CD473 | Primary | Male | Adherent | 42 | 150 | 1.1 | 8, 24, 48 | 64 | 42 | Whole RNA-seq | [30] |
CD60 | Primary | Female | Adherent | 44 | 73 | 73 | ||||||
Glioblastoma (GBM) | GBM1 | Primary | Male | Neurospheres | 62 | 200 | 1.7 | 48 | N/A | 84 | PolyA RNA-seq | c |
JHH520 | Primary | Female | Neurospheres | 56 | N/A | 71 | ||||||
NCH644 | Primary | Female | Neurospheres | 102 | N/A | 73 | ||||||
SF188 | Primary | Male | Neurospheres | 37 | N/A | 75 |