Table 2 Stop-gained, frameshift, and start-lost variants of CMPK2 in gnomAD database.

From: Loss of function of CMPK2 causes mitochondria deficiency and brain calcification

Chromosome Positionsa

rsIDs

Transcript Consequenceb

Protein Consequence

Annotation

Total population

East Asian population

Allele Frequencyc

Homozygote Count

Allele Frequencyd

Homozygote Count

2:6851542

rs776359222

c.1126_1133del

p.Thr376SerfsTer2

frameshift

6.577E-06

0

0

0

2:6851587

rs1188711213

c.1088del

p.Pro363GlnfsTer15

frameshift

6.5699E-06

0

0.00019253

0

2:6851595

rs1177412695

c.1081 C > T

p.Gln361Ter

stop_gained

6.5715E-06

0

0

0

2:6851628

rs200083396

c.1048 C > T

p.Gln350Ter

stop_gained

6.5721E-06

0

0.00019275

0

2:6851632

–

c.1043dup

p.Leu349SerfsTer22

frameshift

6.6141E-06

0

0

0

2:6851660

–

c.1015del

p.Tyr339MetfsTer3

frameshift

6.5719E-06

0

0

0

2:6861364

rs200690985

c.812 C > A

p.Ser271Ter

stop_gained

0.00024969

0

0

0

2:6861364

rs200690985

c.812 C > G

p.Ser271Ter

stop_gained

6.5707E-06

0

0

0

2:6861368

rs757743769

c.808 C > T

p.Gln270Ter

stop_gained

1.3146E-05

0

0

0

2:6863518

–

c.736 C > T

p.Gln246Ter

stop_gained

6.5701E-06

0

0

0

2:6863524

rs773169808

c.710_729del

p.Leu237ProfsTer22

frameshift

6.5739E-06

0

0

0

2:6865075

rs1448087587

c.621del

p.Leu207PhefsTer62

frameshift

6.5697E-06

0

0

0

2:6865141

rs757223880

c.556 C > T

p.Gln186Ter

stop_gained

6.5685E-06

0

0

0

2:6865304

rs894719630

c.391_392del

p.Phe131ProfsTer8

frameshift

6.571E-06

0

0

0

2:6865317

rs774163844

c.379del

p.Ala127HisfsTer142

frameshift

6.5706E-06

0

0

0

2:6865354

–

c.326_342del

p.Arg109ProfsTer25

frameshift

6.5738E-06

0

0.00019283

0

2:6865396

–

c.301 C > T

p.Gln101Ter

stop_gained

6.5822E-06

0

0

0

2:6865397

rs1352574559

c.299_300insG

p.His100GlnfsTer40

frameshift

4.607E-05

0

0

0

2:6865412

–

c.257_284dup

p.His95GlnfsTer54

frameshift

6.5858E-06

0

0

0

2:6865439

rs1485742827

c.230_257del

p.Val77GlyfsTer183

frameshift

6.59E-06

0

0

0

2:6865476

rs1178431768

c.221 C > A

p.Ser74Ter

stop_gained

6.5977E-06

0

0

0

2:6865582

–

c.114del

p.Asp39ThrfsTer9

frameshift

6.5963E-06

0

0

0

  1. aPosition on Genome Reference Consortium human genome build 38 (GRCh38).
  2. bThe accession number for CMPK2 is NM_207315.
  3. cThe frequency of the mutation in total population was calculated by mutated allele number/total allele number in parentheses.
  4. dThe frequency of the mutation in east Asian population was calculated by mutated allele number/total allele number in parentheses. gnomAD, Genome Aggregation Database.