Table 1 Summary of trans-ancestry GWIS results for 2df joint and 1df interaction tests.

From: Gene-lifestyle interactions in the genomics of human complex traits

Outcome

Exposure

# variants

Sample sizea (disc)

Sample sizea (rep)

# Loci (signals)b 2df

# loci (signals)b 1df

Lipids

HDL

Current drinking

7,505,310

127,252

231,043

111 (584)

0 (0)

Drinking habits

6,848,811

118,899

217,468

109 (528)

0 (0)

Current smoking

6,306,314

133,508

253,467

69 (335)

0 (0)

Ever smoking

7,269,995

133,816

251,711

74 (370)

0 (0)

LDL

Current drinking

7,448,913

118,654

171,142

92 (492)

0 (0)

Drinking habits

6,834,699

111,093

155,280

78 (446)

0 (0)

Current smoking

6,261,354

125,629

188,109

53 (251)

0 (0)

Ever smoking

7,251,615

125,638

186,230

45 (163)

0 (0)

TG

Current drinking

7,410,534

104,716

221,722

71 (413)

0 (0)

Drinking habits

6,839,760

103,214

210,623

72 (365)

0 (0)

Current smoking

7,122,377

111,900

241,140

52 (220)

0 (0)

Ever smoking

8,438,564

111,909

238,972

49 (226)

0 (0)

Blood pressure

SBP

Current drinking

7,489,960

121,948

426,121

55 (106)

0 (0)

Drinking habits

10,639,279

62,479

114,058

29 (47)

0 (0)

Current smoking

6,849,695

127,730

474,475

66 (139)

0 (0)

Ever smoking

7,928,860

127,733

458,034

68 (137)

0 (0)

DBP

Current drinking

7,490,269

121,947

426,177

57 (101)

0 (0)

Drinking habits

10,639,829

62,479

114,111

31 (42)

0 (0)

Current Smoking

6,784,799

127,730

474,531

70 (138)

0 (0)

Ever smoking

7,930,829

127,730

458,089

66 (136)

0 (0)

MAP

Current drinking

7,489,903

121,947

426,112

48 (71)

0 (0)

Drinking habits

10,639,231

62,479

113,287

32 (46)

0 (0)

Current smoking

6,848,964

127,730

474,465

69 (144)

1 (1)

Ever smoking

7,932,503

127,730

458,024

67 (137)

0 (0)

PP

Current drinking

7,489,921

121,947

420,767

39 (67)

0 (0)

Drinking habits

10,639,279

62,479

114,111

18 (27)

0 (0)

Current smoking

7,934,402

127,730

473,514

54 (92)

0 (0)

Ever smoking

7,934,402

127,730

457,073

54 (90)

0 (0)

  1. HDL high-density lipoprotein, LDL low-density lipoprotein, TG triglycerides, SBP systolic blood pressure, DBP diastolic blood pressure, MAP mean arterial pressure, PP pulse pressure, 1df 1 degree of freedom interaction test, 2df 2 degrees of freedom joint test, disc Discovery stage, rep replication stage.
  2. aMaximum sample size across all variants analyzed.
  3. bPlain text number corresponds to the count of associated loci (region of 1 Mb or more harboring at least one GWAS hit), while the number of independent association signals (associated SNPs remaining after clumping) is provided in parenthesis.