Table 2 Summary of age at diagnosis, details of variants identified and management change in SZ/SZ+ groups.

From: Impact of rapid genomic testing on clinical outcomes of acutely unwell children presenting with severe epilepsy

Group

Age at diagnosis

Gene affected

Gene function

Class

Variant type

Change in management

Outcome at 12 months after change in management

SZ

25 days

KCNQ2

IC

5

LoF

Commenced on phenobarbitone

Seizures stopped. Medications weaned off.

29 days

KCNQ2

IC

5

LoF

Commenced on phenobarbitone

Only 1 minor seizure. Medication weaned off.

38 days

SCN2A

IC

5

GoF

Changed to carbamazepine

Seizures stopped. Medication weaned off.

40 days

SLC6A5

Dev

5

LoF

Clonazepam added. Specialist (neurology) referral

Seizures stopped. Medications weaned off.

58 days

SCN8A

IC

5

GoF

Changed to sodium channel blocker (lamotrigine) and nitrazepam

Seizures continued (daily multiple seizures). Two attendances to A&E department.

102 days

2q24.3 dup

CNV

5

n/a

Changed to carbamazepine

Seizures stopped. Medication weaned off.

152 days

SCN2A

IC

4

GoF

Changed to carbamazepine

Lost to follow-up

392 days

SCN1A

IC

4

LoF

Changed to sodium valproate

Seizures continue. At least one admission to PICU required.

16 months

POLG

Misc/Mito

5

LoF

Ketogenic diet added

Avoidance of sodium valproate. Specialist (mitochondrial service) referral

Deceased

19 months

SCN1A

IC

4

LoF

Changed to sodium valproate

Seizures only at the time of viral illnesses. Continued on medication.

SZ+

20 days

ASNS

Met

5

LoF

Palliative care

Deceased

23 days

BRAT1

Dev

5

LoF

Palliative care

Deceased

29 days

GLDC

Misc/Mito

5

LoF

Palliative care

Deceased

120 days

CAD

Met

5

LoF

Changed to uridine

Seizures stopped. Under the care of a metabolic specialist.

172 days

SUOX

Met

5

LoF

Palliative care

Deceased

272 days

SLC52A3

Dev

4

LoF

Changed to riboflavin

Seizures stopped. One PICU admission and long-term inpatient care required.

1 year

ALG13

Met

5

LoF

Ketogenic diet added

Seizures increased in frequency: absence seizures most days and myoclonic jerks up to 2-3 times a day. Three attendances to A&E department.

2 years

KCTD7

IC

5

LoF

Specialist (metabolic medicine) referral

Seizures stopped. Continued only on medication for dystonia. One attendance to A&E department.

2.4 years

ABCD5

Met

5

LoF

Specialist (metabolic medicine) referral

Seizures increased. Required several attendances to A&E department.

4.5 years

TPP1

Met

5

LoF

Commenced on ceroliponase, specialist (metabolic medicine) referral

Seizures continued but at reduced frequency (50%). Successfully weaned off topiramide and clobazam.

7 years

KCNQ5

IC

4

GoF

Changed to carbamazepine, ketogenic diet added

Seizures continued. A couple of Tonic-clonic seizures a day. Clobazam added. Attended A&E department 4 times.

13.5 years

3q28q29 del 3q28dup, 10qdup

CNV

5

n/a

Changed to phenytoin

Lost to follow-up

  1. 4, class 4 likely pathogenic variant; 5, class 5 pathogenic variant.
  2. CNV copy number variants, del deletion, Dev developmental genes, dup duplication, GoF gain-of-function variant, IC ion channel, LoF loss-of-function variant, Met metabolic genes, Misc/Mito miscellaneous/mitochondrial genes (both nuclear and mitochondrial genes).