Table 4 QTL associated with variation in the occurrence of larval feeding on Physalis angulata
Population | Chromosome | QTLa | Marker | Additive effect | p-value of additive effect | Percent BC1 variance explained | Percent interspecific difference explained | Direction of interspecific effect | Percent intraspecific difference explained | Direction of intraspecific effect |
|---|---|---|---|---|---|---|---|---|---|---|
CvSM1 | 3 | Q1 | AgT54_92 | −22.67 | 0.0031 | 10.12 | 66.69 | virescens | 66.69 | virescens |
CvSF | 7b | – | – | 7.16 | 0.0689 | 2.20 | 21.06 | subflexa | 21.06 | CVselection |
CvSM1&2 | 10 | Q4 | AgA48_147 | −18.47 | 0.001 | 5.61 | 54.32 | virescens | 54.32 | virescens |
CvSM1 | 11 | Q6 | ACT54_190 | 19.10 | 0.0019 | 11.68 | 56.17 | subflexa | 56.17 | CVselection |
CvSF | 11 | – | – | −8.50 | 0.0265 | 3.10 | 25.00 | virescens | 25.00 | virescens |
CvSF | 14b | – | – | 7.06 | 0.0704 | 1.00 | 20.76 | subflexa | 20.76 | CVselection |
CvSM1&2 | 16 | Q10 | AAT59_228 | −12.47 | 0.0053 | 3.82 | 36.67 | virescens | 36.67 | virescens |
CvSF | 16 | – | – | −9.49 | 0.0138 | 3.60 | 27.91 | virescens | 27.91 | virescens |
CvSM1&2 | 18 | Q12 | ACg61_214 | −36.43 | <0.0001 | 18.16 | 107.15 | virescens | 107.15 | virescens |
CvSM1 | 21 | Q15 | AAA60_109 | −27.38 | 0.0013 | 12.88 | 80.53 | virescens | 80.53 | virescens |
CvSF | 25 | – | – | −7.96 | 0.041 | 2.70 | 23.41 | virescens | 23.41 | virescens |
CvSM1 | Z | Q20 | AAA60_155 | 18.53 | 0.0033 | 10.55 | 54.51 | subflexa | 54.51 | CVselection |
CvSM1&2 | Unlinked | – | AAT59_175 | 14.19 | 0.0022 | 4.96 | 41.73 | subflexa | 41.73 | CVselection |
CvSM2 | Unlinked | – | AAA49_121 | −13.91 | 0.004 | 8.69 | 40.91 | virescens | 40.91 | virescens |
