Table 1 Number of SNPs used for LD-based analysis resulting from simulations in simuPop

From: Estimation of contemporary effective population size and population declines using RAD sequence data

  

Initial variation at t 0

Final variation at t 20

  

RAD mutation

10%

50%

RAD mutation

10%

50%

N

λ

# SNPs

# SNPs

# SNPs

# SNPs

# SNPs

# SNPs

250

1.0

3660

3938

4527

3521

3695

4223

500

1.0

3718

4054

4657

3629

3876

4451

1000

1.0

3756

4130

4742

3703

4013

4611

250

0.9

3915

3941

4676

3099

2965

3457

500

0.9

3719

4053

4661

3392

3493

3975

1000

0.9

3756

4128

4739

3570

3773

4327

  1. SNPs were calculated as average across the 100 replicates for each simulated scenario and are presented for the initial generation (t 0) after the 10-generation equilibrium phase and from the final generation (t 20). SNP levels are broken down across the different initial population sizes (N), population growth rates (λ), and data-filtering methods (LD RAD mutation, 10% missing, and 50% missing data sets).
Back to article page