Table 3 RMSE values for increasing number of SNPs using fastsimcoal2 under a stable population (λ = 1.0)
From: Estimation of contemporary effective population size and population declines using RAD sequence data
5000 | 10,000 | 25,000 | 50,000 | 100,000 | 150,000 | ||
|---|---|---|---|---|---|---|---|
N = 250 | n = 15 | 0.000357 | 0.000357 | 0.000267 | 0.000201 | 0.000136 | 0.000101 |
n = 30 | 0.000118 | 0.000234 | 0.000178 | 0.00014 | 0.000103 | 8.58E−05 | |
n = 60 | 0.000738 | 0.000367 | 0.000153 | 6.30E−05 | 6.14E−05 | 5.73E−05 | |
N = 500 | n = 15 | 0.000233 | 0.00017 | 0.000105 | 0.000153 | 0.000152 | 0.000147 |
n = 30 | 0.00019 | 6.69E−05 | 8.29E−05 | 6.43E−05 | 6.10E−05 | 8.13E−05 | |
n = 60 | 0.000352 | 0.000191 | 8.78E−05 | 5.30E−05 | 5.33E-05 | 5.28E-05 | |
N = 1000 | n = 15 | 0.000217 | 0.000208 | 0.000217 | 0.000208 | 0.00022 | 0.000234 |
n = 30 | 0.000205 | 8.59E−05 | 9.19E−05 | 9.73E−05 | 0.000115 | 0.000113 | |
n = 60 | 0.000188 | 1.18E−04 | 4.66E−05 | 4.04E-05 | 4.52E−05 | 5.50E−05 |
