Table 2 Structure of the Corymbia citriodora subsp. variegata (CCV) terpene synthase physical clusters and the Eucalyptus grandis clusters which are syntenic to CCV

From: Annotation of the Corymbia terpene synthase gene family shows broad conservation but dynamic evolution of physical clusters relative to Eucalyptus

Speciesa

Subfamily

Chromosome

TPS genes

Position (bp)

Span (bp)

Intervening genes

Internal clusteringb

CCV

TPS-a

Chr3

9

29,395,680

3,598,941

202

1(9)2(1)1(22)3(2)1(168)1

Egr

TPS-a

Chr3

3

47,928,331

1,606,854

64

1(2)1(62)1

CCV

TPS-a

Chr4

3

11,823,925

14,705

0

N/A

CCV

TPS-a

Chr4

2

18,100,282

23,876

0

N/A

Egr

TPS-a

Chr4

5

19,896,024

246,197

7

1(2)3(5)1

CCV

TPS-a

Chr5

4

16,525,672

1,219,850

68

1(68)3

CCV

TPS-a

Chr6

6

33,461,887

106,929

0

N/A

Egr

TPS-a

Chr6

10

42,991,263

321,452

0

N/A

CCV

TPS-a

Chr7

3

2,183,056

809,251

59

1(58)1(1)1

CCV

TPS-a

Chr7

2

14,463,251

1,761,379

105

1(105)1

CCV

TPS-b1

Chr1

8

22,285,470

1,866,767

103

1(64)2(1)2(36)1(1)1(1)1

Egr

TPS-b1

Chr1

7

17,720,921

1,286,126

50

1(3)4(1)1(46)1

CCV

TPS-b1

Chr2

2

2,027,307

13,692

0

N/A

CCV

TPS-b1

Chr4

2

8,861,360

169,636

5

1(5)1

Egr

TPS-b1

Chr4

8

16,009,931

217,347

7

1(1)1(1)2(4)2(1)2

CCV

TPS-b1

Chr5

3

41,952,144

3,787,929

215

1(192)1(23)1

CCV

TPS-b1

Chr8

3

29,799,505

47,398

3

1(1)1(2)1

CCV

TPS-b2

Chr10

3

13,605,402

38,144

1

2(1)1

CCV

TPS-b2

Chr11

5

23,810,145

420,788

25

2(25)3

Egr

TPS-b2

Chr11

9

10,288,308

1,164,219

33

3(31)1(1)4(1)1

CCV

TPS-f

Chr4

3

7,135,889

385,574

31

1(31)2

Egr

TPS-f

Chr4

7

12,270,273

287,241

2

3(2)4

CCV

TPS-g

Chr2

2

19,657,471

29,412

2

1(2)1

CCV

TPS-g

Chr5

3

44,341,209

100,371

2

1(2)2

Egr

TPS-g

Chr5

12

62,540,499

1,272,677

25

3(2)3(2)1(19)1(1)1(1)3

  1. a Egr indicate TPS clusters from E. grandis syntenic with the CCV TPS cluster directly above. Loci with only a single TPS gene are not shown
  2. b Structure of the gene cluster, with non-TPS genes indicated by brackets. N/A indicates no intervening genes
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