Table 1 SNPs with potential for adaptive selection based on Bayes factor for bioclimatic variables (BF > 10 for at least one bioclimatic variable) and correlation (Spearman’s correlation, |ρ| > 0.15) using Bayenv2 software
Class | Genbank accession | SNP position | BF Bio04 | ρ Bio04 | BF Bio05 | ρ Bio05 | BF Bio16 | ρ Bio16 | BF Bio17 | ρ Bio17 | Affected gene | Annotation | Function and SNPEff annotation |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
D | NKXS01007262 | 727 | 1.20E +191 | 0.16981 | 1.48E + 130 | -0.1249 | 2.41E + 200 | -0.2012 | 3.07E + 21 | -0.0519 | intergenic_region|MODIFIER | ||
D- | NKXS01007262- | 754 | 4.15E + 123 | 0.13618 | 4.10E + 75 | -0.0941 | 1.78E + 170 | -0.1606 | 3.59E + 15 | -0.0982 | Haimp10041442m.g | PF00006 | ATP synthase alpha/beta family, nucleotide-binding domainupstream_gene_variant|MODIFIER- |
A | NKXS01005069 | 42043 | 983440000.0 | -0.19315 | 5047700.0 | 0.1315 | 2818.80 | 0.1489 | 0.0803 | 0.0218 | Haimp10032484m.g | GO:0008270 | zinc ion binding downstream_gene_variant|MODIFIER |
A | NKXS01000550 | 14775 | 1257900.0 | -0.15949 | 11.9500 | 0.0974 | 21362000.0 | 0.1447 | 0.1058 | 0.0371 | Haimp10033596m.g | GO:0007094 | mitotic spindle assembly checkpoint intron_variant|MODIFIER |
C | NKXS01007262 | 851 | 110.9500 | 0.12024 | 3.6660 | -0.1267 | 402.880 | -0.1650 | 0.1148 | 0.0224 | Haimp10041442m.g | PF00006 | ATP synthase alpha/beta family, nucleotide-binding domainsynonymous_variant|LOW- |
E | NKXS01009478 | 3168 | 85.7210 | -0.15862 | 4.6344 | 0.0933 | 8.5058 | 0.1298 | 0.1482 | 0.0078 | Haimp10004827m.g | KOG2451 | Aldehyde dehydrogenase synonymous_variant|LOW |
F | NKXS01008263 | 19989 | 2.5250 | -0.14615 | 0.7613 | 0.1759 | 17.8370 | 0.1505 | 0.0619 | -0.0827 | Haimp10001090m.g | GO:0004222 | metalloendopeptidase activity intron_variant|MODIFIER |
F | NKXS01007262 | 861 | 0.6732 | 0.12689 | 0.1251 | -0.1304 | 1091.00 | -0.1522 | 0.0693 | 0.0198 | Haimp10041442m.g | PF00006 | ATP synthase alpha/beta family, nucleotide-binding domainsynonymous_variant|LOW |
B | NKXS01000006 | 391845 | 0.4059 | 0.018537 | 10.0000 | 0.1240 | 2.2507 | 0.0518 | 27.8500 | -0.2410 | Haimp10035708m.g | GO:0016760 | cellulose synthase (UDP-forming) activityintron_variant|MODIFIER |
B | NKXS01001400 | 41404 | 0.22740 | 0.023626 | 0.1911 | 0.0867 | 0.0792 | 0.0580 | 13.9020 | -0.2358 | Haimp10009243m.g | - | intron_variant|MODIFIER |
B | NKXS01004138 | 63677 | 0.13580 | -0.072007 | 0.0908 | 0.0667 | 0.1458 | 0.0983 | 46.7970 | -0.1984 | - | intergenic_region|MODIFIER| | |
B | NKXS01000489 | 3109 | 0.1340 | 0.02834 | 0.0857 | 0.0877 | 0.1449 | 0.0572 | 10.3300 | -0.2775 | Haimp10030846m.g | PF13432 | Tetratricopeptide repeat intron_variant|MODIFIER |
B | NKXS01002703 | 64696 | 0.1118 | 0.035165 | 0.0735 | 0.0752 | 0.0528 | 0.0564 | 14.8830 | -0.2750 | Haimp10019312m.g | GO:0006777 | Mo-molybdopterin cofactor biosynthetic processmissense_variant|MODERATE |
A | NKXS01006685 | 6558 | 0.0851 | 0.050983 | 0.1122 | 0.0569 | 0.0775 | 0.0311 | 56.6910 | -0.2467 | Haimp10039384m.g | PF00134 | Cyclin, N-terminal domain intron_variant|MODIFIER |
C | NKXS01003261 | 39765 | 0.0825 | 0.038259 | 0.0903 | 0.0468 | 0.0548 | 0.0041 | 23.1460 | -0.1953 | Haimp10022642m.g | GO:0016597 | amino acid binding synonymous_variant|LOW |
E | NKXS01002889 | 3697 | 0.0743 | 0.0009 | 0.0772 | 0.0771 | 0.0616 | 0.0558 | 18.6630 | -0.1678 | Haimp10020435m.g | K15747 | cytochrome P450, family 97, subfamily A (beta-ring hydroxylase) ynonymous_variant|LOW |
F | NKXS01006483 | 53149 | 0.0743 | 0.0371 | 0.1034 | 0.0814 | 0.0582 | 0.0379 | 13.3330 | -0.2314 | Haimp10038613m.g | GO:0005525 | GTP binding upstream_gene_variant|MODIFIER |
F | NKXS01008537 | 7108 | 0.0738 | 0.0231 | 0.0539 | 0.0809 | 0.0648 | 0.0344 | 34.3730 | -0.2197 | Haimp10001901m.g | PF04051 | Transport protein particle (TRAPP) componentdownstream_gene_variant|MODIFIER |
F | NKXS01003977 | 34289 | 0.0716 | 0.0441 | 0.0657 | 0.0222 | 0.1987 | 0.0142 | 90.3930 | -0.1536 | Haimp10026773m.g | GO:0016773 | phosphotransferase activity, alcohol group as acceptorintron_variant|MODIFIER |
C | NKXS01009331 | 5768 | 0.0655 | 0.0254 | 0.0572 | 0.0723 | 0.0533 | 0.0643 | 35.9380 | -0.2264 | Haimp10004318m.g | GO:0005524 | ATP-binding missense_variant|MODERATE |
C | NKXS01000816 | 49036 | 0.0574 | 0.0355 | 0.0614 | 0.0868 | 0.0524 | 0.0424 | 10.1320 | -0.2472 | Haimp10042856m.g | PF01256 | Carbohydrate kinase intron_variant|MODIFIER |