Table 4 SNPs with potential for adaptive selection based on the analysis of five populations from structure cluster C2, using Outflank software

From: A genome-wide scan shows evidence for local adaptation in a widespread keystone Neotropical forest tree

Genbank accession

SNP position

Affected gene

Annotation

Function and SNPEff annotation

NKXS01001300.1

46,609

Haimp10008207m.g

GO:0000162

Tryptophan biosynthetic process/LOW

NKXS01012733.1

756

Haimp10011772m.g

GO:0010542

Nitrate efflux transmembrane transporter activity/MODIFIER

NKXS01002024.1

84,206

Haimp10014472m.g

GO:0008270

Zinc ion binding/MODERATE

NKXS01002456.1

149,948

Haimp10017658m.g

GO:0000301

Retrograde transport, vesicle recycling within Golgi/LOW

NKXS01002755.1

29,846

Haimp10019594m.g

GO:0031625

Ubiquitin protein ligase binding/MODERATE

NKXS01003907.1

15,012

Haimp10026309m.g

GO:0006970

Response to osmotic stress/LOW

NKXS01000398.1

82,059

Haimp10026508m.g

GO:0000166

Nucleotide binding/LOW

NKXS01004502.1

42,878

Haimp10029651m.g

GO:0046872

Metal ion binding/LOW

NKXS01004933.1

37,022

Haimp10031868m.g

GO:0007264

Small GTPase-mediated signal transduction/LOW

NKXS01005590.1

650

Haimp10034961m.g

GO:0001085

RNA polymerase II transcription factor binding/MODIFIER

NKXS01006140.1

23,081

Haimp10037322m.g

GO:0034314

Arp2/3 complex-mediated actin nucleation/LOW

  1. Scaffold, SNP position, and affected gene were obtained from the genome assembly and annotation (Silva-Junior et al. 2018a, 2018b). SNPEff annotation identifies the SNP position with respect to the genes annotated in the H. impetiginosus genome. Upstream and downstream variants are within 5 kb of the transcribed gene regions
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