Table 2 Overdominant (ODO) quantitative trait loci (QTLs) for yield-related traits

From: Overdominance is the major genetic basis of lint yield heterosis in interspecific hybrids between G. hirsutum and G. barbadense

Trait	ODO QTL	Chr.	Marker	2010	2011	2013	2014	2015	Mean effect	Mean quantitative mode of inheritance
LPP	oLPP-A3-1	A3	BNL2443		√				3.6	103.6
	oLPP-A4-1	A4	NAU3469	√					7.9	104.1
	oLPP-A4-2	A4	Y1315	√					5.7	100.7
	oLPP-A9-1	A9	NAU3888	√	√	√		√	7.0	103.2
	oLPP-A9-2	A9	NAU3414	√	√	√	√	√	6.1	103.0
	oLPP-A13-1	A13	NAU3017	√					7.6	100.7
	oLPP-D1-2	D1	NAU3543		√				2.8	102.8
	oLPP-D13-1	D13	CIR221	√	√				3.2	127.0
	oLPP-D5-1	D5	NAU2708				√		5.0	202.0
	oLPP-D10-1	D10	NAU6562	√	√	√	√		6.9	103.2
	oLPP-D8-1	D8	NAU2292	√					3.6	100.8
	oLPP-D6-1	D6	NAU3532	√	√	√	√	√	3.6	103.6
	oLPP-D6-2	D6	NAU6269	√	√	√		√	4.3	103.9
SPP	oSPP-A2-1	A2	HAU2583	√	√	√	√	√	21.1	110.2
	oSPP-A3-1	A3	BNL2443	√	√	√	√	√	20.1	109.3
	oSPP-A3-2	A3	NAU3479		√				19.3	103.6
	oSPP-A9-1	A9	NAU3888		√				10.7	101.1
	oSPP-A12-2	A12	NAU3519	√	√		√	√	14.9	106.7
	oSPP-D2-1	D2	JESPR156	√	√	√	√	√	13.2	112.8
	oSPP-D1-2	D1	NAU3543	√		√	√	√	10.1	109.3
	oSPP-D7-1	D7	NAU3594	√					10.8	100.8
	oSPP-D13-1	D13	CIR221		√	√			14.6	114.6
	oSPP-D9-1	D9	CIR286		√				12.7	101.8
	oSPP-D6-2	D6	NAU6269	√		√	√	√	16.7	116.6
BN	oBN-A1-1	A1	NAU3254		√	√		√	3.3	100.5
	oBN-A3-1	A3	BNL2443	√	√	√		√	3.9	101.9
	oBN-A5-1	A5	BNL3992	√	√	√	√	√	4.1	101.7
	oBN-A8-1	A8	NAU3793	√	√	√	√	√	4.3	102.1
	oBN-A9-1	A9	NAU3888		√	√		√	2.1	101.1
	oBN-A9-2	A9	NAU3414	√			√		3.9	101.8
	oBN-A12-2	A12	NAU3519		√	√		√	3.9	102.1
	oBN-D1-1	D1	NAU5302			√			0.7	152.3
	oBN-D3-2	D3	NAU3016	√			√		3.7	102.2
	oBN-D13-1	D13	CIR221	√	√	√	√	√	3.5	217.4
	oBN-D13-2	D13	NAU3223	√			√	√	3.7	101.4
	oBN-D10-2	D10	NAU3916		√	√		√	2.8	101.6
	oBN-D11-2	D11	NAU3373	√			√		3.8	102.1
	oBN-D6-1	D6	NAU3532		√	√	√	√	3.3	100.3
	oBN-D6-2	D6	NAU6269			√		√	4.9	100.4
	oBN-D12-1	D12	NAU4925	√	√	√	√	√	6.8	104.0
	oBN-D12-2	D12	NAU3032	√	√		√	√	2.4	102.2
BW	oBW-A9-2	A9	NAU3414	√	√	√	√	√	1.0	100.5
	oBW-A11-2	A11	NAU2152		√				0.5	100.1
	oBW-D7-1	D7	NAU3594	√	√	√	√	√	1.0	100.5
	oBW-D13-2	D13	NAU3223	√	√	√	√	√	0.8	100.4
	oBW-D6-1	D6	NAU3532	√	√	√	√	√	0.5	100.5
	oBW-D12-1	D12	NAU4925	√	√	√	√	√	1.0	100.5
	oBW-D12-2	D12	NAU3032	√	√	√	√	√	1.0	100.5
LI	oLI-A1-1	A1	NAU3254	√		√		√	1.7	101.6
	oLI-A3-2	A3	NAU3479			√			1.2	100.1
	oLI-A8-1	A8	NAU3793	√		√		√	1.5	100.8
	oLI-A8-2	A8	JESPR232			√	√		1.2	100.2
	oLI-D2-1	D2	JESPR156		√				1.7	100.5
	oLI-D1-1	D1	NAU5302	√	√	√	√		1.2	101.0
	oLI-D3-2	D3	NAU3016		√				0.0	100.0
	oLI-D13-1	D13	CIR221	√		√	√	√	1.2	165.0
	oLI-D11-2	D11	NAU3373	√		√	√	√	2.5	101.3
	oLI-D4-1	D4	NAU3781		√				0.8	100.5
	oLI-D8-1	D8	NAU2292	√		√	√	√	2.1	101.0
	oLI-D6-1	D6	NAU3532		√				1.4	101.3
	oLI-D6-2	D6	NAU6269	√			√		1.0	101.0
	oLI-D12-1	D12	NAU4925	√	√	√			2.3	101.3
LP	oLP-A2-1	A2	HAU2583	√	√				4.8	102.5
	oLP-A8-1	A8	NAU3793	√	√	√			4.9	102.8
	oLP-A9-1	A9	NAU3888				√		4.6	100.6
	oLP-A10-1	A10	NAU5323		√		√	√	3.7	103.4
	oLP-A11-1	A11	NAU3341	√	√	√		√	5.4	102.7
	oLP-D1-1	D1	NAU5302				√		2.3	102.3
	oLP-D10-2	D10	NAU3916		√				4.9	104.9
	oLP-D11-1	D11	TMG06			√		√	3.8	103.8
	oLP-D11-2	D11	NAU3373	√	√	√	√	√	5.4	102.6
	oLP-D12-1	D12	NAU4925	√	√				8.0	105.0
	oLP-D12-2	D12	NAU3032	√	√	√		√	6.4	103.1

The above data are counted under the situation with no pleiotropism (Table S3). The symbol ‘√’ means detected in this year
LPP lint yield per plant, SPP seed-cotton yield per plant, BN boll number, BW boll weight, LI lint index, LP lint percentage

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Table 2 Overdominant (ODO) quantitative trait loci (QTLs) for yield-related traits

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