Table 1 The proportion of rejected SNPs (at α = 0.05) under the LRTP, GWET, LRTA, and χ2 -ML tests in 1 kG American populations

From: A test for deviations from expected genotype frequencies on the X chromosome for sex-biased admixed populations

Population

#SNPs

LTRP

GWET

LRTA (this paper)

χ2-ML (this paper)

ACB (African Caribbeans in Barbados)

779,444

0.031

0.030

0.025

0.036

ASW (Americans of African Ancestry in SW USA)

692,300

0.028

0.027

0.024

0.036

CLM (Colombians from Medellin, Colombia)

549,946

0.037

0.037

0.032

0.045

MXL (Mexican Ancestry from Los Angeles USA)

415,094

0.027

0.026

0.028

0.035

PEL (Peruvians from Lima, Peru)

449,003

0.024

0.022

0.022

0.026

PUR (Puerto Ricans from Puerto Rico)

617,842

0.034

0.033

0.029

0.039

  1. For each population, the lowest proportion of rejected SNPs is indicated in bold
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