Table 1 Summary of the genetic diversity at the ten nuclear microsatellites loci and mitochondrial locus (mtDNA)

From: Genetic homogeneity in the face of morphological heterogeneity in the harbor porpoise from the Black Sea and adjacent waters (Phocoena phocoena relicta)

 

All

N = 144a

Aegean Sea

N = 11

Marmara Sea

N = 3

Black Sea

N = 87

Kerch Strait

N = 7

Azov Sea

N = 32

Microsatellite

 N-Mic.

133.0

9.2

2.7

84.9

6.2

27.3

 Ar

7.46(b)

1.51(c)

1.49(c)

1.49(c)

1.53(c)

1.49(c)

 pAr

–

0.22(c)

NA

0.21(c)

0.21(c)

0.22(c)

 Ho/He

0.50/0.50

0.58/0.54

0.58/0.37

0.50/0.49

0.59/0.49

0.45/0.48

 FIS

–0.01NS

–0.19NS

–0.54NS

–0.01NS

–0.19NS

0.05NS

MtDNA

      

 N-mtDNA

21

–

–

15

1

6

 S

29

–

–

25

–

7

 Singleton

24

–

–

22

–

6

 Shared P

5

–

–

3

–

1

 #hap

15

–

–

12

1

6

 Hd

0.93

–

–

0.94

–

1

 π (per site, %) ± SD

0.089 ± 0.019

–

–

0.099 ± 0.025

–

0.065 ± 0.013

 θW (per site, %) ± SD

0.206 ± 0.076

–

–

0.197 ± 0.080

–

0.079 ± 0.045

 D

–2.19**

–

–

–2.07*

–

–1.01NS

  1. The microsatellite data combined 89 samples from Fontaine et al. (2012) with 55 new samples collected in this study. The mitochondrial data set included 12 samples from Fontaine et al. (2014) from the Black Sea and ten new samples collected in this study (see Fig. 1 and Table S1 for details). The descriptive statistics include the number of individuals collected (N), average number of samples successfully genotyped at the ten microsatellite loci (N-Mic.), allelic richness (Ar), private allelic richness (pAr), observed and expected heterozygosity (Ho/He), and inbreeding coefficient (FIS) for the microsatellite data. For the mitochondrial data, the statistics include the mtDNA sample size (NmtDNA), number of segregating sites (S), number of singleton mutations (Singletons), shared polymorphism (Shared P.), number of haplotypes (#hap), haplotype diversity (Hd), nucleotide diversity estimated from pair-wise differences (π) and from S (θW), and Tajima’s D
  2. NA not available, NS not significant (p-value > 0.05)
  3. *p-value ≤ 0.05; **p-value ≤ 0.01; ***p-value ≤ 0.001
  4. aIncludes four additional individuals without sampling location
  5. bGlobal Ar value assumes a standardized sample size of 100 individuals
  6. cLocal Ar and pAr values assume a standardized sample size of two individuals in order to compare among locations and align values on the smallest sample
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