Fig. 2: Pairwise comparison of three seedlings with assumed relationship to seedling 8P16-14-2 for Ritland’s, Milligan’s ML estimator and genotype score correlation for MAF 0.01, 0.05, 0.1, 0.2, 0.3, and 0.4. | Heredity

Fig. 2: Pairwise comparison of three seedlings with assumed relationship to seedling 8P16-14-2 for Ritland’s, Milligan’s ML estimator and genotype score correlation for MAF 0.01, 0.05, 0.1, 0.2, 0.3, and 0.4.

From: Parentage and relatedness reconstruction in Pinus sylvestris using genotyping-by-sequencing

Fig. 2

The x-axis shows the average minor allele frequency in the population after filtering for the various thresholds. Numbers above the second x-axis is the average number of SNPs in the population representing the subsampled loci. We sampled 1000 SNPs for 1000 times per MAF cut off except for MAF 0.4 to get an estimated 95% confidence interval. Numbers above the top C.I. bars are the MAF cut off.

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