Fig. 4: Four scatter plots of pairwise relationship estimates of Västerhus seedlings and the genotypes assumed to be their parents.
From: Parentage and relatedness reconstruction in Pinus sylvestris using genotyping-by-sequencing
Blue filled circles are detected self-pollination, gray are haploid megagametophytes, and red are those deemed to be parent–offspring. a Ritland’s estimate as a function of the shared proportion of SNPs that could be used for the comparison, total number of SNPs after filtering (0.1 MAF, allowed for 40% missing, and loci with 70% heterozygosity or less, loci with significant negative FIT-values were removed) was 7387. b Ritland’s estimate as a function of the correlation in genotype scores. c and d similar to a and b, respectively, but with Milligan’s ML estimation of relatedness.
