Table 2 Significant SNPs associated with TiLV resistance as binary survival (BS) and time to death (TD) in a Nile tilapia (Oreochromis niloticus) breeding population.

SNP	Oni^a	BP^b	P-value^c	Minor/major allele^d	Resistance allele freq^f
TD
AX-317616757	22	255104	4.80E−07	G/T	0.39
AX-317647630	22	5379664	8.20E−07	G/A	0.11
BS
AX-317616757	22	255104	4.51E−10	G/T	0.39
AX-317617572	22	1939192	4.32E−09	T/C	0.39
AX-317645761	22	239073	6.17E−09	A/C	0.36
AX-317619074	22	5785936	6.86E−09	G/A	0.37
AX-317617531	22	1888302	1.13E−08	G/A	0.47
AX-317616778	22	276593	1.24E−08	A/G	0.56
AX-317648645	22	6115097	3.30E−08	A/G	0.46
AX-317617852	22	2432164	4.23E−08	T/G	0.40
AX-317616808	22	760642	7.96E−08	T/C	0.48
AX-317647368	22	3478052	8.47E−08	A/G	0.48
AX-317647975	22	5629013	1.60E−08	G/T	0.16
AX-317621349	22	9718148	1.81E−08	G/A	0.72
AX-317617390	22	1758060	2.02E−08	C/T	0.42
AX-317647016	22	2521284	2.13E−08	A/G	0.14
AX-317618485	22	5289967	2.22E−08	T/C	0.39
AX-317649969	22	9299308	2.38E−08	A/G	0.58
AX-317647630	22	5379664	2.70E−08	G/A	0.11
AX-317620863	22	9336674	2.81E−08	C/T	0.45
AX-317647753	22	5479097	3.56E−08	C/A	0.11
AX-317617254	22	1616487	3.92E−08	C/T	0.11
AX-317718855	03	71847333	4.37E−07	C/T^e	0.24
AX-317646938	22	2445275	4.45E−07	A/G	0.10
AX-317646411	22	1714252	4.95E−07	A/G	0.10
AX-317617977	22	2555673	4.97E−07	C/T	0.14
AX-317620317	22	8916395	6.99E−07	C/T	0.13
AX-317063470	22	1441242	7.27E−07	A/G	0.10
AX-317646673	22	1988041	7.86E−07	A/G	0.29
AX-317617288	22	1660924	9.54E−07	T/G	0.11
AX-317648270	22	5898003	9.65E−07	G/A	0.12

^aNumber of chromosome on the Oreochromis niloticus genome.
^bPosition of the SNP in the chromosome, in base pairs.
^cP value of the SNP for the genome-wide association study for host resistance to TiLV.
^dIn bold is the allele conferring the resistant phenotype.
^eThe resistant genotype is heterozygous.
^fFrequency of the allele conferring the resistance phenotype to TiLV.

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