Table 2 Significant QTL effects detected by CIM for sprout growth at all six time-points (4, 18, 32, 46, 60 and 74 days post harvest) and Gompertz model parameters BETA and KAPPA.

From: Combining conventional QTL analysis and whole-exome capture-based bulk-segregant analysis provides new genetic insights into tuber sprout elongation and dormancy release in a diploid potato population

Trait

Year

LG

Locus

Position (cM)

−log10(P)

Add. Eff (maternal)

s.e

Add. Eff (paternal)

s.e.

Dom. Eff

s.e.

t18

2013

2

c2_33973

13.5

6.23

−0.84

0.25

0.80

0.25

−0.72

0.25

t32

2013

 

c2_32421

13.79

8.9

−0.91

0.28

1.54

0.28

–

–

t46

2013

 

c2_33973

13.5

9.87

−1.01

0.32

1.84

0.31

–

–

t60

2013

 

c2_32421

13.79

11.11

−1.32

0.35

2.08

0.35

–

–

t60

2014

 

c2_33993

14.04

5.15

−0.84

0.3

1.16

0.29

–

–

t74

2013

 

c2_33993

14.04

9.78

−1.60

0.53

3.21

0.53

–

–

t74

2014

 

c2_33993

14.04

9.76

−1.42

0.33

1.66

0.32

–

–

KAPPA

2013

 

c2_51998

32.52

4.44

–

–

0.00

0

–

–

KAPPA

2014

 

c2_51998

32.52

7.11

0.00

0

0.00

0

  

t4

2013

3

c2_53699

31.42

6.96

0.32

0.17

−0.96

0.17

–

–

t4

2014

 

c1_432

39.55

4.77

–

–

−0.33

0.07

–

–

t18

2013

 

c2_50372

3.46

4.81

0.65

0.28

−1.15

0.27

–

–

t18

2013

 

c2_55072

34.85

3.91

–

–

−1.19

0.28

–

–

t18

2014

 

c2_13987

41.71

8.81

0.38

0.16

−1.06

0.17

–

–

t32

2013

 

c1_6869

19.39

10.49

–

–

−2.09

0.29

–

–

t32

2014

 

c2_57254

43.32

10.83

–

–

−1.66

0.23

–

–

t46

2013

 

c1_6869

19.39

9.7

–

–

−2.23

0.32

–

–

t46

2014

 

c1_6875

19.28

10.39

–

–

−2.09

0.29

–

–

t60

2013

 

c2_57360

18.73

8.58

–

–

−2.39

0.36

–

–

t60

2014

 

c2_57360

18.73

8.89

–

–

−1.97

0.3

–

–

t60

2014

 

c2_578

60.44

2.86

–

–

−1.07

0.29

–

–

t74

2013

 

c2_57354

18.72

6.69

–

–

−2.90

0.53

–

–

t74

2014

 

c2_57360

18.73

9.75

–

–

−2.30

0.33

–

–

BETA

2013

 

c2_53699

31.42

6.84

–

–

0.13

0.02

–

–

BETA

2014

 

c2_57354

18.72

3.28

–

–

0.06

0.02

–

–

BETA

2014

 

c2_17770

48.93

3.66

–

–

0.07

0.02

–

–

t4

2013

4

c2_26741

58.77

4.6

−0.53

0.17

−0.48

0.16

0.47

0.17

t18

2013

 

c1_11211

46.45

5.34

−0.92

0.25

−0.78

0.25

0.53

0.25

t18

2014

 

c2_49997

48.22

6.49

−0.44

0.16

−0.57

0.16

0.57

0.16

t32

2013

 

c2_26741

58.77

7.46

−1.39

0.28

−0.75

0.28

0.96

0.28

t32

2014

 

c2_44609

16.79

2.19

–

–

−0.74

0.24

–

–

t32

2014

 

c2_49997

48.22

3.87

−0.88

0.25

−0.58

0.25

–

–

t46

2013

 

c1_8330

58.73

8.56

−1.81

0.32

−0.88

0.31

0.93

0.31

t46

2014

 

c1_15982

29.97

5.99

−0.87

0.28

−1.25

0.28

0.57

0.28

t60

2013

 

c2_26741

58.77

9.19

−1.99

0.36

−0.87

0.34

1.33

0.35

t60

2014

 

c2_26843

15.88

1.9

–

–

−0.75

0.33

0.71

0.29

t60

2014

 

c2_49997

48.22

4.95

−1.40

0.33

−0.79

0.34

–

–

t74

2013

 

c2_26741

58.77

8.78

−2.96

0.54

−1.71

0.52

1.65

0.53

t74

2014

 

c1_13603

44.68

6.19

−1.54

0.33

−0.80

0.33

–

–

BETA

2014

 

c2_21364

52.38

3.89

0.05

0.02

0.05

0.02

–

–

t18

2013

5

c1_1216

63.72

4.86

–

–

1.19

0.25

–

–

t18

2014

 

c2_22995

14.03

4.13

−0.51

0.17

−0.13

0.17

−0.54

0.17

t32

2013

 

c1_1216

63.72

6.66

–

–

1.58

0.28

–

–

t32

2014

 

c2_22995

14.03

4.98

−0.69

0.22

–

–

−0.82

0.23

t32

2014

 

c1_1077

63.37

7.2

–

–

1.25

0.21

–

–

t46

2013

 

c1_1216

63.72

7.24

–

–

1.85

0.31

–

–

t46

2014

 

c1_1077

63.37

6.75

–

–

1.59

0.28

–

–

t60

2013

 

c1_1216

63.72

7.28

–

–

2.14

0.35

–

–

t60

2014

 

c2_8522

59.42

9.07

–

–

1.99

0.3

–

–

t74

2013

 

c1_1250

63.73

4.88

–

–

2.50

0.52

–

–

t74

2014

 

c2_8210

62.17

9.05

–

–

2.15

0.32

–

–

BETA

2014

 

c1_1077

63.37

5.51

–

–

−0.08

0.02

–

–

BETA

2013

9

c2_13304

16.5

3.49

−0.09

0.02

–

–

–

–

t18

2014

10

c2_40763

36.25

4.21

−0.39

0.16

–

–

−0.61

0.16

t32

2013

 

c2_27795

44.4

5.74

−0.64

0.28

1.32

0.28

–

–

t32

2014

 

c1_13243

47.07

5.95

−0.52

0.21

0.78

0.21

−0.72

0.21

t46

2013

 

c2_27795

44.4

7.39

−0.69

0.31

1.75

0.31

–

–

t46

2014

 

c2_27795

44.4

7.18

−0.79

0.28

1.36

0.28

−0.75

0.28

t60

2013

 

c2_27795

44.4

9.06

−0.81

0.35

2.28

0.34

–

–

t60

2014

 

c2_27831

47.32

10.94

−0.65

0.29

2.01

0.29

−0.85

0.29

t74

2013

 

c2_27831

47.32

8.08

–

–

3.26

0.53

–

–

t74

2014

 

c2_27821

42.99

7.6

–

–

1.91

0.32

–

–

KAPPA

2013

 

c2_54444

41.49

4.6

–

–

0.00

0

–

–

KAPPA

2014

 

c2_32740

22.97

5.54

–

–

0.00

0

–

–

  1. Data are presented in linkage group order with maternal and paternal additive effects presented separately, along with overall dominance effects.
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