Table 2 Fifty-one LR seedling QTNs identified using two or more multi-locus GWAS models.
S.No | QTN | Pathotypes | Marker | Allele | CHR | Physical Position (bp) | R2 (%) | Method |
|---|---|---|---|---|---|---|---|---|
1 | QLr.iari-1AL_12-5 | 12-5 | AX-94564902 | G/A | 1AL | 560951545 | 4.24–5.50 | 2, 4, 5 |
2 | QLr.iari -1BS_12-5 | 12-5 | AX-94795575 | A/G | 1BS | 11699838 | 6.05–8.92 | 1,2 |
3 | QLr. iari -1DS_12-5 | 12-5 | AX-94694366 | T/C | 1DS | 11664706 | 2.01–4.33 | 1,4,6 |
4 | QLr. iari -2BL_12-5 | 12-5 | AX-94744507 | C/T | 2BL | 794501018 | 4.80–10.81 | 2,6 |
5 | QLr.iari -2DS_12-5 | 12-5 | AX-94453702 | G/C | 2DS | 1998328 | 4.78–6.17 | 1,2 |
6 | QLr. iari -3DL.1_12-5 | 12-5 | AX-95226287 | C/T | 3DL | 607097529 | 7.46–9.39 | 1,6 |
7 | QLr. iari -3DL.2_12-5 | 12-5 | AX-95211729 | A/G | 3DL | 608924291 | 3.44–9.06 | 2,3,4,5 |
8 | QLr..iari -5DL.1_12-5 | 12-5 | AX-95168536 | A/G | 5DL | 545524679 | 3.97–5.60 | 1,2 |
9 | QLr..iari -5DL.2_12-5 | 12-5 | AX-95226435 | T/C | 5DL | 560790484 | 2.59–6.33 | 1,4,5,6 |
10 | QLr..iari -6BS_12-5 | 12-5 | AX-94674559 | T/G | 6BS | 301578848 | 0.88–0.97 | 4, 5 |
11 | QLr..iari -6DS_12-5 | 12-5 | AX-94931523 | G/C | 6DS | 23076689 | 1.79–2.23 | 1,2 |
12 | QLr..iari -7BL_12-5 | 12-5 | AX-95123606 | A/C | 7BL | 701212551 | 2.03–3.02 | 4,6 |
13 | QLr.iari -7DS_12-5 | 12-5 | AX-94447690 | C/T | 7DS | 47016560 | 5.03–6.71 | 4, 6 |
14 | QLr..iari -1AS_77-5 | 77-5 | AX-94974317 | T/C | 1AS | 20977920 | 4.30–5.06 | 1,4 |
15 | QLr.iari -1DL_77-5 | 77-5 | AX-94775918 | T/C | 1DL | 412088785 | 0.98–1.76 | 2,6 |
16 | QLr.iari -3AL.1_77-5 | 77-5 | AX-94480950 | T/C | 3AL | 633055312 | 0.97–2.36 | 1,2,4 |
17 | QLr.iari -3AL.2_77-5 | 77-5 | AX-94701636 | C/T | 3AL | 749413006 | 6.62–10.32 | 5,6 |
18 | QLr. iari -3BL.1_77-5. | 77-5 | AX-94499868 | C/T | 3Bl | 803201073 | 2.14–3.45 | 1,4 |
19 | QLr. iari -3BL.2_77-5. | 77-5 | AX-94883935 | A/C | 3BL | 816277499 | 0.99–20.76 | 3,4,5,6 |
20 | QLr..iari -3BL.3_77-5 | 77-5 | AX-94671785 | T/C | 3BL | 817016565 | 1.67–6.43 | 2,5 |
21 | QLr.iari -3DL_77-5 | 77-5 | AX-94972939 | C/T | 3DL | 606949438 | 14.05–30.38 | 3,5 |
22 | QLr.iari -3DS.1_77-5 | 77-5 | AX-95100303 | C/T | 3DS | 29690437 | 1.37–4.67 | 2,3 |
23 | QLr..iari -3DS.2_77-5 | 77-5 | AX-94414881 | G/T | 3DS | 144780567 | 1.75–4.31 | 1,2,4 |
24 | QLr.iari -5DL_77-5 | 77-5 | AX-94847013 | A/G | 5DL | 437528918 | 2.58–5.14 | 1,2,3,4,5 |
25 | QLr.iari -6DL_77-5 | 77-5 | AX-95101610 | G/A | 6DL | 272647337 | 0.94–2.52 | 2,3,4 |
26 | QLr. iari -7AS_77-5 | 77-5 | AX-94671978 | T/G | 7AS | 220400414 | 1.63–5.28 | 1,4,6 |
27 | QLr.iari -7DS_77-5 | 77-5 | AX-94833633 | T/C | 7DS | 164201584 | 1.71–4.45 | 2,6 |
28 | QLr. iari -1BS_77-9 | 77-9 | AX-94393003 | T/C | 1BS | 99755031 | 2.50–5.58 | 2,4 |
29 | QLr. iari -1DS_77-9. | 77-9 | AX-94691001 | G/T | 1DS | 110660531 | 4.15–9.48 | 1,3,4,5 |
30 | QLr.iari -2AL.1_77-9 | 77-9 | AX-94849863 | G/T | 2AL | 709622777 | 2.08–2.78 | 2,4,5 |
31 | QLr. iari -2AL.2_77-9 | 77-9 | AX-94481508 | T/C | 2AL | 728409839 | 1.99–5.91 | 1,2,3,4,5 |
32 | QLr.iari -2BS_77-9 | 77-9 | AX-94880760 | A/C | 2BS | 72577514 | 4.36–4.53 | 3,6 |
33 | QLr.iari -3AL_77-9 | 77-9 | AX-94681641 | C/G | 3AL | 739951129 | 11.25–13.72 | 1,2,5 |
34 | QLr. iari -3BL_77-9 | 77-9 | AX-95245050 | C/T | 3BL | 804561298 | 10.30–31.72 | 1,2,4,5 |
35 | QLr. iari -3DL.1_77-9 | 77-9 | AX-95226287 | C/T | 3DL | 607097529 | 4.42–6.14 | 3,4 |
36 | QLr. iari -3DL.2_77-9 | 77-9 | AX-95211729 | A/G | 3DL | 608924291 | 3.83–11.70 | 4,6 |
37 | QLr. iari -5DL_77-9. | 77-9 | AX-94943882 | A/G | 5DL | 425717324 | 1.17–1.18 | 2,4,5 |
38 | QLr.iari -6DL_77-9 | 77-9 | AX-94623196 | A/G | 6DL | 468095658 | 2.61–3.50 | 1,2,5 |
39 | QLr. iari -7AL_77-9 | 77-9 | AX-94831246 | C/G | 7AL | 722304163 | 1.93–4.23 | 4,5 |
40 | QLr. iari -7AS_77-9 | 77-9 | AX-94492006 | C/T | 7AS | 180661949 | 2.96–11.13 | 3,4 |
41 | QLr.iari -1AL_104-2 | 104-2 | AX-94777053 | T/C | 1AL | 577474249 | 2.39–2.95 | 1,6 |
42 | QLr. iari -3AL_104-2 | 104-2 | AX-94480950 | T/C | 3AL | 633055312 | 1.68–5.00 | 1,2,3,4 |
43 | QLr. iari -3AS_104-2 | 104-2 | AX-94712805 | G/C | 3AS | 176558149 | 1.47–3.62 | 5,6 |
44 | QLr.iari -3BL_104-2 | 104-2 | AX-94642697 | C/G | 3BL | 816523654 | 0.58–12.60 | 4,5 |
45 | QLr. iari -3DL.1_104-2 | 104-2 | AX-95226287 | C/T | 3DL | 607097529 | 5.80–18.45 | 2,3,4,5,6 |
46 | QLr. iari -3DL.2_104-2. | 104-2 | AX-95211729 | A/G | 3DL | 608924291 | 6.74–11.64 | 1,2,6 |
47 | QLr. iari -5AL_104-2 | 104-2 | AX-94947385 | G/C | 5AL | 551050275 | 6.81–7.29 | 1,2 |
48 | QLr. iari -5DL_104-2 | 104-2 | AX-95107192 | C/A | 5DL | 550191244 | 2.20–4.26 | 1,2,3,4,5 |
49 | QLr.iari -7AS_104-2 | 104-2 | AX-94553654 | G/A | 7AS | 347145913 | 1.28–1.74 | 4,5 |
50 | QLr. iari -7BL_104-2 | 104-2 | AX-94564853 | A/G | 7BL | 673962683 | 6.54–7.69 | 5,6 |
51 | QLr. iari -7BS_104-2 | 104-2 | AX-94622619 | T/C | 7BS | 24401102 | 1.33–4.12 | 4,6 |
