Table 1 Classification of contigs according to their differential expression in the susceptible and resistant genotype upon infection with U. pisi

From: First genetic linkage map of Lathyrus cicera based on RNA sequencing-derived markers: Key tool for genetic mapping of disease resistance

Expression pattern group

Feature

# of contigs

A

Upregulated in Resistant

Upregulated in Susceptible

2,161

B

Upregulated in Resistant

Upregulated in Susceptible, higher in Susceptible

12

C

Upregulated in Resistant, higher in Resistant

Upregulated in Susceptible

20

D

Upregulated in Susceptible

1,715

E

Upregulated in Resistant

338

F

Downregulated in Resistant

Downregulated in Susceptible

4,520

G

Downregulated in Susceptible

1,399

H

Downregulated in Resistant

3,498

Total

 

13,663

  1. Upregulated: (log2 ≥ 2; q value ≤ 0.05); Downregulated: (log2 ≤ −2; q value ≤ 0.05); higher in Susceptible: (log2 fold change between all resistant and susceptible genotype contigs ≤ −2; q value ≤ 0.05); higher in Resistant: (log2 fold change between all resistant and susceptible genotype contigs ≥ 2; q value ≤ 0.05).
Back to article page