Table 2 Validation of single nucleotide polymorphism (SNP) markers for apple scab, fire blight, and powdery mildew resistance loci using the IRSCOA v1.0 array
Locus | Marker | Susceptible | Resistant | Chi-square (p-value) |
|---|---|---|---|---|
Rvi6/Vf | AHX1JK8 | |||
A/A | 125 | 5 | p < 0.00001 | |
A/G | 0 | 70 | p < 0.00001 | |
G/G | 1 | 3 | 0.317 | |
Rvi6/Vf | AHVJM8S | |||
C/C | 124 | 7 | p < 0.00001 | |
C/T | 1 | 67 | p < 0.00001 | |
T/T | 1 | 4 | 0.179 | |
Rvi6/Vf | AHZAHRG | |||
C/C | 117 | 4 | p < 0.00001 | |
C/T | 9 | 71 | p < 0.00001 | |
T/T | 3 | 3 | 1 | |
Rvi6/Vf | AHWSLEO | |||
G/G | 127 | 8 | p < 0.00001 | |
A/G | 1 | 70 | p < 0.00001 | |
Rvi2/Vh2 | AHI15IL | |||
T/T | 139 | 10 | p < 0.00001 | |
A/T | 0 | 51 | p < 0.00001 | |
Rvi2/Vh2 | AHFBAZX | |||
A/A | 2 | 2 | 1 | |
A/G | 43 | 52 | 0.351 | |
G/G | 82 | 14 | p < 0.00001 | |
Rvi2/Vh2 | AHGJ855 | |||
G/G | 62 | 9 | p < 0.00001 | |
A/G | 79 | 55 | 0.039 | |
Rvi2/Vh2 | AHHS7CD | |||
A/A | 51 | 6 | ||
A/G | 74 | 34 | 0.0001 | |
G/G | 16 | 24 | 0.205 | |
Rvi4/Vh4 | AHLJ1U1 | |||
G/G | 204 | 0 | p < 0.00001 | |
T/G | 0 | 2 | 0.157 | |
Rvi11/Vbj | AH0JFXO | |||
T/T | 187 | 1 | p < 0.00001 | |
C/T | 17 | 1 | 0.0001 | |
Rvi11/Vbj | AH1SD3W | |||
C/C | 181 | 0 | p < 0.00001 | |
C/T | 20 | 1 | p < 0.00001 | |
T/T | 5 | 1 | 0.102 | |
Rvi11/Vbj | AH4AAGC | |||
G/G | 4 | 0 | p < 0.00001 | |
A/G | 197 | 2 | p < 0.00001 | |
Rvi11/Vbj | AH5I8MK | |||
C/C | 193 | 1 | p < 0.00001 | |
C/T | 6 | 0 | p < 0.00001 | |
T/T | 1 | 0 | ||
MR5/RLP1 | AH0JFXM | |||
G/T | 1 | 2 | ||
T/T | 202 | 0 | p < 0.00001 | |
MR5/RLP1 | AH21B92 | |||
G/G | 200 | 0 | p < 0.00001 | |
A/G | 4 | 2 | 0.414 | |
MR5/RLP1 | AH4AAGA | |||
C/C | 199 | 0 | p < 0.00001 | |
A/C | 5 | 2 | 0.256 | |
MR5/RLP1 | AH5I8MI | |||
C/C | 197 | 0 | p < 0.00001 | |
A/C | 3 | 2 | 0.654 | |
MR5/RLP1 | AH6R6SQ | |||
A/A | 201 | 0 | p < 0.00001 | |
A/T | 1 | 2 | 0.563 | |
Pl2 | AHD2CTO | |||
A/A | 88 | 0 | p < 0.00001 | |
A/G | 0 | 6 | p < 0.00001 | |
G/G | 1 | 0 | ||
Pl2 | AHFBAZW | |||
C/T | 1 | 6 | 0.037 | |
T/T | 89 | 0 | p < 0.00001 | |
Pl2 | AHGJ854 | |||
C/C | 10 | 6 | 0.354 | |
C/T | 3 | 0 | ||
T/T | 70 | 0 | p < 0.00001 |
