Table 1 Summary of the v4.0.a2 annotation
From: Updated annotation of the wild strawberry Fragaria vesca V4 genome
Type | v4.0.a1 | v4.0.a2 |
|---|---|---|
Protein-coding genes | ||
Number of genes | 28,588 | 34,007 |
Mean length of genomic loci | 3,213 | 2,953 |
Mean exon number | 5.5 | 6.6 |
Mean CDS length | 1,178 | 1,155 |
Mean length of introns | 350 | 322 |
Genes with 5′ UTR | 16,001 | 19,711 |
Genes with 3′ UTR | 17,263 | 20,119 |
Genes with both 5′ and 3′ UTR | 14,657 | 18,909 |
Mean 5′ UTR length (bp) | 197 | 225 |
Mean 3′ UTR length (bp) | 336 | 406 |
Number of genes with isoforms | — | 10,176 |
Mean isoform number per gene | 1.0 | 1.9 |
Genes with GO terms | 15,208 | 18,523 |
Genes with functional annotations | 25,095 | 30,692 |
Complete BUSCOs | 91.1% | 98.1% |
Fragmented BUSCOs | 2.1% | 0.8% |
Missing BUSCOs | 6.8% | 1.1% |
