Table 5 Grapevine candidate genes for phytoseiid abundance and trichome related traits

From: A QTL associated with leaf trichome traits has a major influence on the abundance of the predatory mite Typhlodromus pyri in a hybrid grapevine population

Chra

Start position

Vitis gene nameb

Trichome-related gene name; function; Query id

Associated phenotype

1

8,079,551

VIT_201s0127g00730

GL1 (GLABRA 1); transcription factor; NP_189430.1

Phytoseiid, hair on blades

MYB23 (myb domain protein 23); DNA binding/transcription factor; NP_198849.1

9,724,089

VIT_201s0026g00850

GIS2 (GLABROUS INFLORESCENCE STEMS 2); nucleic acid binding/transcription factor/zinc ion binding; NP_196283.1

Phytoseiid, domatia (rating), domatia (size), hair on blades, hair on veins

ZFP8 (ZINC FINGER PROTEIN 8); nucleic acid binding/transcription factor/zinc ion binding; NP_181725.1

19,230,746

VIT_201s0010g02270

RGA1 (REPRESSOR OF GA1-3 1); transcription factor; NP_178266.1

Phytoseiid, domatia (rating), bristles on blades, bristles on veins

RGL1 (RGA-LIKE 1); transcription factor; NP_176809.1

2

8,739,817

VIT_02s0012g02030

GL2 (GLABRA 2); DNA binding/transcription factor; NP_001185443.1

Hair on veins

5

1,128,866

VIT_05s0077g01390

GIS2 (GLABROUS INFLORESCENCE STEMS 2); nucleic acid binding/transcription factor/zinc ion binding; NP_196283.1

Hair on blades

8

20,543,918

VIT_208s0007g06870

GIS (GLABROUS INFLORESCENCE STEMS); nucleic acid binding/transcription factor/zinc ion binding; NP_191366.1

Hair on blades

GIS2 (GLABROUS INFLORESCENCE STEMS 2); nucleic acid binding/transcription factor/zinc ion binding; NP_196283.1

Hair on blades

ZFP8 (ZINC FINGER PROTEIN 8); nucleic acid binding/transcription factor/zinc ion binding; NP_181725.1

Hair on blades

20,865,263

VIT_208s0007g07230

MYB5; transcription repressor; NP_187963.1

Hair on blades

15

13,245,041

VIT_15s0021g02290

SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8); DNA binding; NP_683267.1

Domatia (size)

13,256,743

VIT_215s0021g02300

SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8); DNA binding; NP_683267.1

Domatia (size)

16,133,315

VIT_15s0048g02000

GL2 (GLABRA 2); DNA binding/transcription factor; NP_001185443.1

Domatia (size), domatia (rating), bristles on blades

17,211,622

VIT_215s0046g00170

MYB5, transcription repressor; NP_187963.1

Domatia (rating)

18,177,217

VIT_215s0046g01130

CPC (CAPRICE); DNA binding/transcription factor; AAS09991.1

Domatia (rating)

  

ETC2 (ENHANCER OF TRY AND CPC 2); DNA binding/transcription factor; NP_850145.1

Domatia (rating)

ETC3 (ENHANCER OF TRY AND CPC 3); DNA binding/transcription factor; NP_974493.1

Domatia (rating)

TCL1 (TRICHOMELESS1); DNA binding; NP_001031445.1

Domatia (rating)

TCL2 (TRICHOMELESS2); NP_001118417.1

Domatia (rating)

TRY (TRIPTYCHON); DNA binding transcription factor; NP_200132.2

Domatia (rating)

  1. Candidate genes based on the PN40024 Vitis vinifera 12X.0 reference genome. Homologous Arabidopsis thaliana genes are indicated
  2. aChr indicates the physical chromosome number
  3. bVitis gene names come from annotations V1 and V2.1 from the CRIBI database37
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