Table 3 Differentially expressed transcripts (DETs) of hormone genes identified in the transcriptome comparison between nonchilled flower bud (NB) of the Mu-legacy and ‘Legacy’ plants (2014 data)

From: VcRR2 regulates chilling-mediated flowering through expression of hormone genes in a transgenic blueberry mutant

Query id

Subject id

Blast_e-value

Pathway

Gene name

Annotation by Trinotate

Legacy

Mu-legacy

Log2(Mu-legacy NB/ Legacy NB)

Log2(CB/NB)

Log2(CB/LPB)

Log2(CB/NB)

Log2(CB/LPB)

 

c49456_g2_i2

  

VcARP6

ACTS_RAT

−8.91

−9.43

#N/A

−5.55

6.89

 

c66039_g1_i1

  

nptII

KKA2_KLEPN

#N/A

#N/A

#N/A

#N/A

−8.57

 

c92529_g4_i2

  

VcRR2

ARR2_ARATH

#N/A

#N/A

#N/A

#N/A

−7.26

 

c32575_g1_i1

  

VcDDF1

DRE1E_ARATH

−2.23

−4.84

#N/A

#N/A

−6.75

 

c96767_g2_i12

  

VcRR2

#N/A

#N/A

#N/A

#N/A

−4.22

AT5G45340.1

c69424_g1_i1

2.00E−65

ABA

CYP707A3

ABAH3_ORYSI

6.64

5.88

5.16

6.66

−5.37

AT3G19270.1

c69424_g2_i1

5.00E−124

ABA

CYP707A4

ABAH4_ARATH

5.66

7.72

5.16

10.15

−5.08

AT5G45340.1

c69424_g2_i1

8.00E−100

ABA

CYP707A3

ABAH4_ARATH

5.66

7.72

5.16

10.15

−5.08

AT3G19270.1

c83950_g1_i2

0

ABA

CYP707A4

ABAH4_ARATH

6.62

−1.53

4.74

#N/A

−4.77

AT2G29090.1

c83950_g1_i1

0

ABA

CYP707A2

6.41

−1.38

4.74

#N/A

−4.60

AT1G52400.1

c91881_g1_i1

5.00E−89

ABA

BGL1, ATBG1, BGLU18

HIUH_SOYBN

1.94

−0.49

#N/A

−2.51

−1.67

AT1G52400.1

c80508_g1_i1

9.00E−134

ABA

BGL1, ATBG1, BGLU18

RG1_RAUSE

#N/A

#N/A

#N/A

−1.84

−1.61

AT1G52400.1

c91881_g1_i2

7.00E−82

ABA

BGL1, ATBG1, BGLU18

HIUH_SOYBN

1.38

#N/A

#N/A

−2.03

−1.18

AT2G22330.1

c85230_g2_i1

9.00E−56

Auxin

CYP79B3

C70A2_ARATH

11.98

11.82

0.50

10.93

−7.88

AT4G31500.1

c94863_g6_i2

1.00E−62

Auxin

RNT1, RED1, SUR2, ATR4, CYP83B1

C81E8_MEDTR

2.75

#N/A

#N/A

−2.87

−1.85

AT4G31500.1

c93443_g1_i1

2.00E−65

Auxin

RNT1, RED1, SUR2, ATR4, CYP83B1

C81E8_MEDTR

2.06

2.53

#N/A

−1.19

−1.40

AT4G31500.1

c93443_g1_i3

1.00E−65

Auxin

RNT1, RED1, SUR2, ATR4, CYP83B1

C81E8_MEDTR

2.32

3.12

#N/A

−1.59

−1.20

AT1G08980.1

c89856_g5_i1

7.00E−163

Auxin

ATAMI1, AMI1, TOC64-I, ATTOC64-I

AMI1_ARATH

#N/A

#N/A

#N/A

0.66

0.66

AT4G31500.1

c83219_g1_i2

4.00E−43

Auxin

RNT1, RED1, SUR2, ATR4, CYP83B1

C78A5_ARATH

−1.36

4.08

0.54

2.46

1.05

AT2G22330.1

c90066_g1_i1

2.00E−47

Auxin

CYP79B3

C82A3_SOYBN

0.95

4.97

0.56

#N/A

1.45

AT5G11320.1

c87553_g1_i1

7.00E−85

Auxin

AtYUC4, YUC4

YUC4_ARATH

−1.69

5.66

#N/A

−1.54

1.91

AT2G36800.1

c93075_g2_i1

6.00E−88

BR

UGT73C5, DOGT1

5.01

#N/A

#N/A

2.32

−1.80

AT2G26710.1

c97437_g3_i3

1.00E−123

BR

CYP734 A1, CYP72B1, BAS1

C7A22_PANGI

1.85

#N/A

#N/A

−1.87

−1.42

AT1G17060.1

c93255_g4_i4

8.00E−74

BR

CHI2, SOB7, CYP72C1, SHK1

C7A29_PANGI

#N/A

2.51

#N/A

−1.49

−1.30

AT2G26710.1

c93255_g4_i5

9.00E−140

BR

CYP734 A1, CYP72B1, BAS1

C7A29_PANGI

#N/A

2.74

#N/A

−1.37

−1.02

AT2G26710.1

c54735_g3_i1

6.00E−112

BR

CYP734A1, CYP72B1, BAS1

C72A1_CATRO

−2.01

−7.66

6.67

−7.85

3.35

AT1G22400.1

c92329_g1_i1

2.00E−52

Cytokinin

UGT85A1, ATUGT85A1

UFOG_VITVI

5.36

#N/A

#N/A

1.15

−3.31

AT2G36800.1

c93075_g2_i1

6.00E−88

Cytokinin

UGT73C5, DOGT1

5.01

#N/A

#N/A

2.32

−1.80

AT5G11160.1

c82929_g1_i1

5.00E−108

Cytokinin

APT5

APT5_ARATH

#N/A

#N/A

#N/A

0.74

0.77

AT5G11160.1

c82929_g1_i2

2.00E−109

Cytokinin

APT5

APT5_ARATH

#N/A

#N/A

#N/A

#N/A

1.28

AT1G20510.1

c79869_g1_i1

4.00E−103

JA

OPCL1

4 CLL1_ARATH

12.22

11.44

#N/A

11.67

−7.33

AT3G48520.1

c93124_g4_i1

3.00E−95

JA

CYP94B3

C70B1_ARATH

9.17

4.24

#N/A

5.56

−5.99

AT1G44350.1

c91828_g2_i1

0

JA

ILL6

ILL6_ARATH

2.55

#N/A

−0.50

−3.50

−1.31

AT5G07010.1

c90152_g5_i1

4.00E−86

JA

ST2A

SOT15_ARATH

1.09

1.27

#N/A

−1.66

−0.94

  1. Corresponding DETs identified from the other four transcriptome comparison of the flower bud tissues, including chilled (CB) vs. NB and chilled vs. late-pink bud (LPB) for ‘Legacy’ and Mu-legacy plants, respectively, were also included. #N/A: No differential expression