Fig. 2: SNP index plot from MutMap and gene structure of BrNYM1. | Horticulture Research

Fig. 2: SNP index plot from MutMap and gene structure of BrNYM1.

From: Defect in Brnym1, a magnesium-dechelatase protein, causes a stay-green phenotype in an EMS-mutagenized Chinese cabbage (Brassica campestris L. ssp. pekinensis) line

Fig. 2

a SNP index of ten chromosomes plotted by MutMap sliding window analysis. The x-axis represents the positions of ten chromosomes. The y-axis represents the SNP index. The dotted pink line is the index (0.95) threshold line. Black lines were created by averaging SNP indices from a moving window spanning five consecutive SNPs and moving window one SNP at a time. b SNP index plot from MutMap identifying the candidate region on chromosome A03. Black and dotted pink lines are described above. c Candidate genes in the mapping region. Gray boxes and arrows represent genes and mutation sites, respectively. Sequence analysis revealed one SNP (C in wild-type; T in mutant) in the third exon resulting in an amino acid mutation (L in wild type; F in mutant).

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