Table 3 Summary of diversity indexes and private SNPs in Eremurus species using SNPs identified within subpopulations (‘subpopulation SNPs’)

From: Intra- and interspecific diversity analyses in the genus Eremurus in Iran using genotyping-by-sequencing reveal geographic population structure

Species

SNP dataset

N

Ne (SE)

I (SE)

Ho (SE)

He (SE)

Fis (SE)

P (%)

Heterozygous SNPs (%)

E. luteus

6131

13

1.810 (0.002)

0.632 (0.001)

0.204 (0.002)

0.441 (0.001)

0.552 (0.003)

100.00

19.46

E. stenophyllus

5281

13

1.559 (0.004)

0.501 (0.002)

0.260 (0.002)

0.334 (0.002)

0.190 (0.005)

94.49

25.19

E. olgae

17

1.345 (0.005)

0.322 (0.004)

0.145 (0.002)

0.208 (0.003)

0.225 (0.005)

74.82

14.44

E. spectabilis

4175

26

1.701 (0.004)

0.587 (0.001)

0.179 (0.002)

0.401 (0.001)

0.587 (0.004)

100.00

16.96

  1. N number of accessions, Ne number of effective alleles, I Shannon’s information index, Ho observed heterozygosity, He expected heterozygosity, Fis fixation index, SE standard error, P percentage of polymorphic loci (%)
  2. SNP dataset: number of SNPs in the dataset used to calculate the diversity indexes; private SNPs: number of SNPs fixed in one species (at a frequency of 100%) and absent in all other species; diagnostic SNPs: number of SNPs present in one species at a frequency below 100% and absent in all other species
  3. E_S_62 and E_GH7 were not included in this analysis
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