Table 1 Summary of significant associations detected for quantitative and qualitative traits. For each trait, the position in bp on the chromosome, the corresponding annotated gene or close annotated gene, known genes related to the trait and number of SNPs with a high putative effect are shown
Trait | Chromosome | Position | Locus name | Close annotated locus name | Know QTL | Number of high impact SNPs |
|---|---|---|---|---|---|---|
Color b | 1 | 78,911,282–82,203,699 | Solyc01g079760, Solyc01g087260 | Solyc01g087260: 2 | ||
Color b | 2 | 44,794,084 | Solyc02g080610 | |||
Color b | 3 | 52,153,309–52,406,077 | Solyc03g081260, Solyc03g081300, Solyc03g082480 | Solyc03g081260: 14 | ||
Color b | 5 | 9,596,743–9,779,918 | Solyc05g015030, Solyc05g015070 | Solyc05g015030: 2 | ||
Color b | 10 | 60,308,826 | Solyc10g078510 | |||
Color L | 3 | 65,751,759 | ||||
Dark-green leaf | 9 | 65,565,848–65,566,230 | – | Solyc09g072880 | ||
Fruit fasciation | 1 | 3,690,368–3,918,681 | Solyc01g009510 | Solyc01g009510: 1 | ||
Fruit fasciation | 4 | 3,935,728 | – | |||
Fruit weight | 2 | 49,587,330–52,662,216 | Solyc02g087050, Solyc02g087780, Solyc02g087810, Solyc02g091330 | fw2.2 | Solyc02g087050: 1, Solyc02g091330: 1 | |
Fruit weight | 7 | 1,318,982 | Solyc07g006520 | Solyc07g006520: 1 | ||
Fruit weight | 9 | 31453421 | – | fw9.2 | ||
Fruit weight | 9 | 60,775,035 | – | fw9.2 | ||
Fruit weight | 12 | 61,805,734 | Solyc12g055810 | |||
Inflorescence forked | 9 | 68,492,821–68,496,154 | Solyc09g082830 | |||
Inflorescnce uniparous | 11 | 55,020,323–55,194,697 | Solyc11g071600, Solyc11g071830, Solyc11g071840 | Solyc11g071600: 1 | ||
Leaf length | 2 | 39,577,220–39,581,181 | – | Solyc02g069760 | ||
Leaf length | 8 | 60,002,113–60,010,971 | – | |||
Locule number | 1 | 3,717,866 | – | |||
Locule number | 2 | 49,617,538 | Solyc02g087100 | locule number (lc) | Solyc02g087100: 1 | |
Locule number | 11 | 54,838,887–55,194,697 | Solyc11g071310, Solyc11g071600, Solyc11g071820, Solyc11g071830, Solyc11g071840 | fas and fw11.3 | ||
Longitudinal stripes | 4 | 60,283,297 | – | Solyc04g074290 | ||
Longitudinal stripes | 8 | 65,493,583 | Solyc08g082820 | Solyc08g082820: 2 | ||
Number flowers in second inflorescence | 7 | 65,679,033 | – | |||
Number flowers in second inflorescence | 11 | 101,719–612,480 | Solyc11g005110 | Solyc11g005510, Solyc11g005570 | ||
Petal curvature low | 7 | 1,760,949 | – | Solyc07g006910 | ||
Petal length | 9 | 69,065,327 | – | Solyc09g083410 | ||
Pink mature fruit | 1 | 78,736,178–78,911,282 | Solyc01g079760 | Solyc01g079620 | Solyc01g079620: 5 | |
Pistil scar dot | 12 | 61,805,734 | Solyc12g055810 | Solyc12g055810: 2 | ||
Pistil scar irregular | 11 | 54,838,887–55,194,697 | Solyc11g071310, Solyc11g071580, Solyc11g071600, Solyc11g071820, Solyc11g071830, Solyc11g071840 | Solyc11g071580: 9 | ||
Ribbing calix end | 11 | 55,020,323–55,183,870 | Solyc11g071600, Solyc11g071820, Solyc11g071830 | |||
Total number of inflorescences | 1 | 3,717,866 | – |
