Table 1 V. riparia ‘Manitoba 37’ assembly and gene prediction statistics
From: Draft genome of the Native American cold hardy grapevine Vitis riparia Michx. ‘Manitoba 37’
Assembly statistics | Details | V. riparia assembly (≥500 bp) |
|---|---|---|
Number of scaffolds | 69,616 | |
Total size of scaffolds | 494,682,949 | |
Longest scaffold | 5,123,774 | |
Number of scaffolds >1 K nt | 31,418 | |
Number of scaffolds >10 K nt | 1760 | |
Number of scaffolds >100 K nt | 742 | |
Number of scaffolds >1 M nt | 97 | |
Scaffold %N | 3.57 | |
N50 scaffold length | 518,740 | |
NG50 scaffold length | 535,518 | |
N50 contig length | 61,142 | |
Gene prediction | ||
Total CDS and protein | 40,019 | |
Total CDS bp | 39,395,553 | |
Mean CDS length | 984.4 | |
Longest CDS length | 16,443 | |
Total protein length | 13,093,122 | |
Mean protein length | 327.2 | |
Longest protein length | 5480 |
