Table 1 Final genome assembly based on the assembled contigs from Miniasm
PacBio Assembly (polished) | Hi-C Assembly | |
|---|---|---|
Total scaffold length (Gb) | 2.232 | |
Number of scaffolds | 9510 | |
Scaffold N50 (Mb) | 92.86 | |
Scaffold N90 (Mb) | 19.29 | |
Max scaffold length (Mb) | 168.50 | |
Total contig length (Gb) | 2.22 | |
Number of contigs | 15,615 | |
Contig N50 (kb) | 269.114 | |
Contig N90 (kb) | 60.09 | |
Max contig length (kb) | 2,134.98 | |
Complete BUSCOs | 91.90% | 88.50% |
Complete and single-copy BUSCOs | 87.00% | 85.20% |
Complete and duplicate BUSCOs | 4.90% | 3.30% |
Fragmented BUSCOs | 3.00% | 4.40% |
