Table 1 Accuracy of phasing and haplotyping based on four software algorithms.

From: Tracing founder haplotypes of Japanese apple varieties: application in genomic prediction and genome-wide association study

 

Beagle

findhap.f90

MaCH

fastPHASE

Phasing accuracy

0.98

0.97

0.97

0.94

Haplotyping accuracy

0.90

0.68

0.87

0.69