Table 1 Overview of sequencing quality and alignments
Samples | Raw reads number | Clean reads number | alignment rate (%) | Uniq mapped paired reads number | Uniq mapped rate (%) | % ≥ Q30 |
|---|---|---|---|---|---|---|
G–I-1 | ######## | ######## | 90.74 | 18587163 | 78.60 | 93.55 |
G–O-1 | ######## | ######## | 93.48 | 17698972 | 78.41 | 94.17 |
G–I-2 | ######## | ######## | 93.22 | 18742643 | 81.52 | 93.45 |
G–O-2 | ######## | ######## | 96.65 | 19198612 | 84.83 | 93.42 |
G–I-3 | ######## | ######## | 94.37 | 20530127 | 81.94 | 93.78 |
G–O-3 | ######## | ######## | 95.03 | 18126722 | 81.51 | 92.88 |
NG–I-1 | ######## | ######## | 88.81 | 17052026 | 76.71 | 93.61 |
NG–O-1 | ######## | ######## | 93.77 | 18771576 | 80.76 | 93.27 |
NG–I-2 | ######## | ######## | 93.51 | 19433496 | 81.22 | 93.68 |
NG–O-2 | ######## | ######## | 96.17 | 17847879 | 83.48 | 93.81 |
NG–I-3 | ######## | ######## | 91.50 | 17693229 | 80.12 | 93.83 |
NG–O-3 | ######## | ######## | 95.76 | 18317915 | 83.99 | 93.81 |
