Table 2 Multi-species detection of dicistronic tRNA–mRNA transcripts using DiRT to analyse publicly available RNA-seq experiments accessible from the Sequence Read Archive (SRA)
Species | SRA Project number | RNA-seq libraries analysed (average reads/library) | Tissue | Number of tRNA isodecoders forming dicistronic transcripts | Number of dicistronic tRNA–mRNA candidates identified |
|---|---|---|---|---|---|
Oryza sativa ssp. japonica | PRJNA403975 PRJNA301554 PRJNA350792 | 17 (67 M) | Leaf, root | 14 | 29 |
Brachypodium distachyon | PRJNA293888 PRJNA371381 PRJNA383406 | 12 (57 M) | Leaf, root | 2 | 3 |
Arabidopsis thaliana | PRJNA271927 PRJNA241198 PRJNA246731 PRJNA318918 | 24 (46 M) | Leaf, root, shoot | 9 | 11 |
Vitis vinifera | PRJNA311966 PRJNA383160 PRJNA342391 PRJNA260535 PRJNA307079 PRJNA386484 PRJNA433817 PRJNA268857 | 44 (30 M) | Leaf, root, berry | 15 | 39 |
Azolla Filiculoides | PRJNA430527 PRJNA264391 | 9 (40 M) | Whole plant, root | 2 | 4 |
Salvinia cucullata | PRJNA430459 | 6 (43 M) | Leaf | 1 | 2 |
Selaginella moellendorfii | PRJEB29012 PRJNA271595 | 9 (31 M) | Leaf, root | 23 | 49 |
Physcomitrella patens | PRJNA417704 PRJNA397394 PRJNA294412 PRJNA259146 PRJNA259147 | 17 (32 M) | Whole plant, protonema, chloronemata | 0 | 0 |
Marchantia polymorpha | PRJDB4420 PRJNA433456 | 11 (21 M) | Thallus, antheridiophore, archegoniophore | 0 | 0 |
