Fig. 4: Stable and dynamic expression patterns of homoeologs.

a Variations in the observed lower homoeolog expression-difference, medium homoeolog expression-difference, and higher homoeolog expression-difference categories. b Expression patterns across tissues querying dynamic vs. stable homoeologs. c Base pair distances to the nearest TEs comparing dynamic vs. stable homoeologs. TF binding site categories for dynamic vs. stable homoeologs: d number of shared motifs among dynamic vs. among stable homoeologs; e number of specific motifs among dynamic vs. among stable homoeologs. f Intron number per gene for dynamic vs. stable homoeologs. g–i Ka, Ks, and Ka/Ks ratio for dynamic vs. stable homoeologs. The bottom and top of each box represent the 25th and 75th percentiles, respectively. The centerline represents the 50th percentile. The whiskers indicate the minimum and maximum values. Colors are consistent with cluster colors presented under (b). Mann–Whitney–Wilcoxon test. ***p < 0.001