Table 1 Statistics of the ginger genome
Chromosome number (2n) | 2n = 2x = 22 | ||
|---|---|---|---|
Estimate of genome size | 1,593,035,063 bp | ||
Haplotype 1 | Haplotype 0 | ||
Contig assembly | Total number of contigs | 669 | 636 |
Assembly size | 1,526,395,517 | 1,504,782,856 | |
N50 | 4,675,000 | 5,281,000 | |
N90 | 1,486,624 | 1,602,234 | |
Largest contig | 26,686,000 | 20,644,377 | |
Scaffold assembly | Total number of scaffolds | 11 | 11 |
Assembly size | 1,527,053,517 | 1,505,407,856 | |
N50 | 141,499,028 | 142,996,746 | |
N90 | 97,488,358 | 99,672,939 | |
Largest scaffold | 179,820,657 | 197,841,224 | |
Annotation | GC content | 39.20% | 39.20% |
Repeat content | 56.90% | 56.70% | |
Number of protein-coding genes | 39,217 | 38,090 | |
Average length of protein-coding genes | 5031 | 5028 | |
