Table 1 Summary of the assembly and annotation of the Z. bungeanum genome.
Assembly | Statistics |
|---|---|
Genome-sequencing depth (×) | 100 |
Estimated genome size (Gb, by flow cytometry) | 4.43 |
Assembly length (Gb) | 4.23 |
Total number of contigs | 16,879 |
Maximum contig length (Mb) | 4.15 |
Minimum contig length (kb) | 10.0 |
N50 contig length (kb) | 410.07 |
Total number of scaffolds | 332 |
N50 scaffold length (Mb) | 74.18 |
Longest scaffold (Mb) | 119.53 |
Assembly % of genome | 98.44 |
GC content (%) | 36.81 |
Heterozygosity rate (%) | 2.87 |
Annotation | Number |
No. of genes | 74,307 |
Average coding sequence length (kb) | 3725 |
Percentage of gene length in the genome (%) | 6.53 |
Repeat region ratio of assembly (%) | 89.14 |
No. of exons | 397,906 |
Average exon sequence length (bp) | 237.62 |
No. of introns | 397,905 |
Average intron sequence length (bp) | 392.83 |
miRNA | 422 |
rRNA | 454 |
tRNA | 1406 |
