Table 2 The significant m6A-SNPs for SBP in GWAS-2018
SNP rsID | Gene | CHR | Positiona | EA | EAF | GWAS | eQTL effect | Confidence level | m6A functionc | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
β SBP | P SBP | β CAD | P CAD | β stroke | P stroke | Asianb | |||||||||
rs56001051 | C1orf167 | 1 | 11,838,841 | G | 0.10 | −0.0378 | 1.49E − 21 | – | – | – | – | Yes | cis | Low | Gain |
rs715 | CPS1 | 2 | 211,543,055 | C | 0.29 | −0.0155 | 5.67E − 09 | – | – | – | –- | No | trans | Low | Loss |
rs1733860 | PODXL | 7 | 131,185,995 | A | 0.36 | 0.0160 | 1.70E − 10 | – | – | – | – | No | trans | Low | Gain |
rs9657518 | RP1L1 | 8 | 10,467,589 | C | 0.34 | 0.0160 | 2.89E − 08 | – | – | – | – | Yes | trans | Low | Gain |
rs4639 | NEIL2 | 8 | 11,644,751 | G | 0.41 | 0.0160 | 1.03E − 10 | – | – | – | – | No | cis | Low | Gain |
rs1801253 | ADRB1 | 10 | 115,805,056 | C | 0.34 | 0.0182 | 9.24E − 11 | – | – | – | – | No | cis | Low | Loss |
rs3758911 | CWF19L2 | 11 | 107,197,640 | C | 0.32 | 0.0142 | 4.28E − 08 | – | – | – | – | No | cis | Low | Gain |
rs7398833 | CUX2 | 12 | 111,786,892 | C | 0.24 | −0.0201 | 7.33E −12 | −0.0344 | 1.22E−03 | −0.0431 | 1.78E−05 | No | trans | Low | Gain |
rs1885986 | SMG6 | 17 | 2,203,175 | G | 0.34 | −0.0173 | 2.07E − 11 | – | – | – | – | No | cis | Medium | Loss |
rs17650901 | MAPT | 17 | 44,039,691 | G | 0.23 | −0.0168 | 9.87E − 09 | – | – | – | – | No | cis | Low | Loss |
rs1881193 | KANSL1 | 17 | 44,248,769 | C | 0.23 | −0.0169 | 8.73E − 09 | – | – | – | – | No | trans | Medium | Loss |
rs197922 | GOSR2 | 17 | 45,008,570 | A | 0.35 | 0.0166 | 1.30E − 10 | 0.0313 | 9.70E − 04 | – | – | Yes | cis | Low | Loss |
rs740406 | DOT1L | 19 | 2,232,221 | G | 0.07 | 0.0295 | 2.79E − 08 | −0.0381 | 3.03E − 02 | – | – | Yes | cis | Low | Gain |