Fig. 5
From: Genome-wide prediction of DNase I hypersensitivity using gene expression
The predicted DNase I hypersensitivity database (PDDB). a Flowchart illustrating how to use PDDB. Step 1: provide a list of genomic loci of interest. Step 2: provide keywords in one or multiple annotation fields (e.g., type “stem cell” in the “Cell Type” column) to search for samples of interest. PDDB will return predicted DH for the queried loci and samples along with sample annotation and data for visualization. b Web interface of PDDB. Users can download the predicted DH data by clicking the “Download DNase-seq” button. The sample annotation data can be downloaded by clicking the “Get Annotation Data” button. c By clicking the “Visualization of Predicted DNase-Seq data in UCSC Browser” link in the PDDB web interface (red circle in b), one can display the predicted DH signal in the UCSC genome browser
