Table 1 Summary of activity assays on different substrates
Polysaccharide | LsAA9A | CvAA9A | ||
---|---|---|---|---|
Activity | Notes | Activity | Notes | |
Cellulose and cello-oligosaccharides | ++ | Activity on both cellulose oligosaccharides and insoluble cellulose material (PASC) | ++ | Activity on both cellulose oligosaccharides and insoluble cellulose material (PASC) |
MLG | ++ | Pattern suggests β-(1 → 3) bonds accommodated at specific places within active site, but not between −1 and +1 | ++ | Pattern suggests β-(1 → 3) bonds accommodated at specific places within active site, but not between −1 and +1 |
Glucomannan and Man6 | ++ | Cleavage can occur with Glc or mannose at −1 or +1. Inactivity on Man6 indicates some Glc C2 hydroxyl orientation needs to be present between −3 and +3 | ++ | Cleavage can occur with Glc or mannose at −1 or +1. Inactivity on Man6 indicates some Glc C2 hydroxyl orientation needs to be present between −3 and +3 |
Xyloglucan | ++ | Cleavage occurs with unsubstituted Glc at subsite +1. Xylosyl substitution at −3, −2, −1, +2 and +3. Galactosyl-xylosyl substitutions can occur at either −2, −1 and/or +3 | ++ | Cleavage occurs with unsubstituted Glc at subsite +1. Xylosyl substitution at −3, −2, −1, +2 and +3. Galactosyl-xylosyl substitutions can occur at either −2, −1 and/or +3 |
Xylan and Xyl6 | + | Activity on both. Weak Xyl6 activity compared to Cell6 suggests that, while Glc C6 is not required for activity, it is very important at certain sites, such as +1 | +/– | Much poorer activity of CvAA9A compared with LsAA9A |
Starch | – | Absence of activity indicates that LsAA9A necessarily cleaves β-(1 → 4) bonds | – | Absence of activity indicates that CvAA9A necessarily cleaves β-(1 → 4) bonds |
Laminarin | – | – | ||
G4G3G4G (MLG oligosaccharide) | – | – | ||
Chitin | – | Absence of activity indicates that LsAA9A either requires O2 interactions or cannot accommodate N-acetyl on amino C2 | – | Absence of activity indicates that CvAA9A either requires O2 interactions or cannot accommodate N-acetyl on amino C2 |