Table 2 ABySS-Bloom sequence identity calculations between amphibian genome assemblies

From: The North American bullfrog draft genome provides insight into hormonal regulation of long noncoding RNA

  

Estimated time since divergence (MYA)

  

R. catesbeiana

N. parkeri

X. tropicalis

Estimated identity (%)

R. catesbeiana

–

89.0

208.6

N. parkeri

86.01 ± 3.32 × 10−4

–

208.6

X. tropicalis

79.16 ± 3.42 × 10−3

77.92 ± 2.51 × 10−3

–

  1. k = 25, Sequences ≥ 500 bp
  2. Note that R. catesbeiana and N. parkeri are hypothesized to share a common ancestor that diverged from the ancestor of X. tropicalis; this is reflected in the identical estimated time since divergence from the X. tropicalis ancestor for these two organisms
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