Table 1 Selection of carrageenan-induced genes in Z. galactanivorans
From: Carrageenan catabolism is encoded by a complex regulon in marine heterotrophic bacteria
Locus_tag | Description (gene name/acronym, family) | KC/D-gal | IC/D-gal | D-AnG/D-gal | |||
|---|---|---|---|---|---|---|---|
log2-FC* | padj | log2-FC | padj | log2-FC | padj | ||
ZGAL_181 | Sulfatase (cgsB2, S1_7) | 8.4 | 7.47E-94 | 8.0 | 5.81E-85 | 5.1 | 3.66E-34 |
ZGAL_236 | Kappa-carrageenase (cgkA, GH16) | 10.6 | 2.68E-163 | 8.7 | 7.26E-110 | 0.8 | 1 |
ZGAL_1973 | Iota-carrageenase (cgiA3, GH82) | 7.6 | 7.15E-56 | 8.7 | 1.12E-72 | 0.1 | 1 |
ZGAL_3145 | Sulfatase (cgsA, S1_19) | 6.3 | 1.7E-65 | 5.1 | 1.69E-41 | 3.7 | 3.48E-20 |
ZGAL_3146 | Sulfatase (cgsB1, S1_7) | 6.8 | 1.2E-117 | 6.0 | 1.04E-91 | 3.9 | 1.20E-33 |
ZGAL_3147 | α-1,3-(3,6-anhydro)-d-galactosidase (dagA1, GH127) | 7.2 | 7.4E-135 | 6.9 | 5.12E-125 | 3.3 | 2.67E-25 |
ZGAL_3148 | α-1,3-(3,6-anhydro)-d-galactosidase (dagA2, GH127) | 6.6 | 2.7E-61 | 6.8 | 5.52E-65 | 3.5 | 6.80E-16 |
ZGAL_3149 | Sugar permease (MFS) | 6.7 | 3.0E-65 | 6.2 | 9.61E-55 | 4.7 | 9.94E-31 |
ZGAL_3150 | α-1,3-(3,6-anhydro)-d-galactosidase (dagA3, GH127) | 8.1 | 2.9E-108 | 7.8 | 3.02E-99 | 7.1 | 3.78E-82 |
ZGAL_3151 | Sulfatase (cgsC, S1_17) | 4.8 | 5.4E-44 | 4.1 | 1.50E-31 | 0.7 | 1 |
ZGAL_3152 | α-1,3-(3,6-anhydro)-d-galactosidase (dagB, new GH) | 3.9 | 6.5E-23 | 2.8 | 5.72E-11 | 0.6 | 1 |
ZGAL_3153 | 2-keto-3-deoxy-d-galactonate aldolase (dauD) | 4.2 | 9.9E-44 | 3.8 | 2.07E-35 | 0.4 | 1 |
ZGAL_3154 | 2-keto-3-deoxy-d-galactonate kinase (dauC) | 3.6 | 2.4E-30 | 3.3 | 1.84E-25 | 1.2 | 0.1516 |
ZGAL_3155 | 3,6-anhydro-d-galactose dehydrogenase (dauA) | 8.1 | 1.3E-80 | 7.3 | 4.01E-65 | 5.6 | 1.40E-37 |
ZGAL_3156 | 3,6-anhydro-d-galactonate cycloisomerase (dauB) | 9.7 | 2.0E-89 | 9.3 | 1.21E-81 | 5.2 | 1.07E-23 |
ZGAL_3157 | Sugar/H+ symporter (DMT) | 8.4 | 5.8E-140 | 8.0 | 3.68E-125 | 7.0 | 3.85E-95 |
ZGAL_3158 | High-affinity sugar transporter | 4.3 | 8.1E-39 | 3.0 | 4.15E-17 | 4.1 | 8.61E-34 |
ZGAL_3159 | Transcriptional regulator (cgrA, AraC family) | 2.3 | 1.8E-14 | 1.2 | 0.0504 | −0.5 | 1 |
ZGAL_3580 | SusD-like lipoprotein (cgtB) | 9.1 | 2.04E-124 | 8.3 | 5.65E-104 | 4.2 | 1.17E-24 |
ZGAL_3581 | SusC-like TonB-dependent receptor (cgtA) | 9.6 | 1.93E-103 | 9.5 | 1.31E-99 | 4.3 | 4.99E-19 |
ZGAL_3629 | Sulfatase (S1_30) | 8.5 | 8.26E-55 | 4.9 | 2.82E-16 | −0.1 | 1 |
ZGAL_3630 | Sulfatase(S1_28) | 7.1 | 5.54E-48 | 4.3 | 6.27E-16 | 0.8 | 1 |
ZGAL_3631 | Polygalacturonase, (GH28) | 7.8 | 1.43E-36 | 3.9 | 1.70E-07 | −0.4 | 1 |
ZGAL_3632 | Polygalacturonase, (GH28) | 7.8 | 8.43E-20 | 4.3 | 1.66E-04 | −0.3 | 1 |
ZGAL_3633 | Beta-galactosidase (GH2) | 9.4 | 1.85E-66 | 6.9 | 2.66E-35 | 1.0 | 1 |
ZGAL_3634 | Alpha-l-fucosidase (GH29) | 8.3 | 3.04E-28 | 4.8 | 9.25E-08 | 1.8 | 1 |
ZGAL_3637 | SusC-like TonB-dependent transporter (TBDT) | 9.2 | 1.81E-51 | 5.1 | 1.14E-14 | 0,7 | 1 |
ZGAL_3638 | SusD-like lipoprotein (SGBP) | 9.9 | 3.92E-53 | 5.3 | 8.26E-14 | −0,1 | 1 |
ZGAL_4265 | Iota-carrageenase (cgiA1, GH82) | 8.7 | 2.10E-56 | 4.7 | 6.12E-15 | 0.0 | 1 |
