Table 1 Homologous genomic regions differentiating wilds from domestics in Ovis and Capra

From: Convergent genomic signatures of domestication in sheep and goats

Chromosome

Code

Gene

Δπ

Ovis 1 | Capra 3

ENSOARG00000006800 | SLAMF7

Novel gene | SLAM family member 7

0.12 | 0.11

Ovis 1 | Capra 3

SLAMF1

Signaling lymphocytic activation molecule precursor 1

0.13 | 0.10

Ovis 1 | Capra 1

Intergenic

None

0.09 | 0.14

Ovis 2 | Capra 2

Intergenic

None

0.15 | 0.08

Ovis 3 | Capra 5

KITLG

Proto-oncogene receptor tyrosine kinase ligand

0.18 | −0.15

Ovis 3 | Capra 5

KITLG

Proto-oncogene receptor tyrosine kinase ligand

0.26 | −0.21

Ovis 3| Capra 5

HMGI-C

High mobility group protein I-C

0.11 | 0.12

Ovis 6 | Capra 6

HERC5 | HERC6

HECT & RLD domain containing E3 ubiquitin protein ligase 5 | 6

0.24 | −0.11

Ovis 6 | Capra 6

SLC34A2 | Intergenic

Solute carrier family 34 member 2 | None

0.18 | 0.23

Ovis 7 | Capra 10

Intergenic

None

0.08 | 0.20

Ovis 9 | Capra 14

POP1

Ribonuclease P/MRP subunit

−0.03 | 0.11

Ovis 10 | Capra 12

NBEA

Neurobeachin

0.11 | 0.16

Ovis 10 | Capra 12

CRYL1

Crystallin lambda 1

0.01 | 0.19

Ovis 11 | Capra 19

RNF213

Ring finger protein 213

0.13 | −0.26

Ovis 15 | Capra 15

U1 | HBE1

U1 spliceosomal RNA | Hemoglobin subunit epsilon-1

0.22 | 0.09

Ovis 16 | Capra 20

TRIP13 | SLC12A7

Thyroid hormone receptor interactor 13 | Solute carrier family 12 member 7

0.16 | −0.16

Ovis 20 | Capra 23

SUPT3H

SPT3 homolog, SAGA and STAGA complex component

0.08 | 0.06

Ovis 20 | Capra 23

EXOC2 | DUSP22

Exocyst complex component 2 | Dual specificity phosphatase 22

0.25 | 0.03

Ovis 24 | Capra 25

HBM | LUC7L

Hemoglobin subunit Mu | LUC like 7

0.33 | 0.12

Ovis 26 | Capra 27

MTMR7

Myotubularin related protein 7

0.15 | 0.07

  1. When different in both genera, information is given for Ovis | Capra. Positive Δπ indicates a lower diversity in domestics (e.g., directional positive or stabilizing selection in domestics) while negative values indicate a lower diversity in the wilds (e.g., diversifying selection / relaxation in domestics or recent positive selection in the wilds). The phenotypic effects presented are inferred from the bibliography and classified in a livestock perspective. The Uniprot GO terms associated to these genes are available from Supplementary Data 4
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