Table 1 Population genetic statistics for CSP, TRAP, and SERA2 calculated using genome-wide sequencing data
From: Host-mediated selection impacts the diversity of Plasmodium falciparum antigens within infections
CSP | TRAP | SERA2 | ||||
|---|---|---|---|---|---|---|
Full gene | Amplicon region | Full gene | Amplicon region | Full gene | Amplicon region | |
Nucleotide diversity | ||||||
Senegal | 0.00601 (99) | 0.0204 (99) | 0.0102 (99) | 0.0122 (99) | 0.00191 (96) | 0.00888 (99) |
Malawi | 0.00806 (99) | 0.0211 (99) | 0.0102 (99) | 0.0132 (99) | 0.00198 (96) | 0.00894 (99) |
Non-synonymous nucleotide diversity | ||||||
Senegal | 0.00674 (99) | 0.0254 (99) | 0.0120 (99) | 0.0137 (99) | 0.00181 (96) | 0.0120 (99) |
Malawi | 0.00713 (99) | 0.0263 (99) | 0.0120 (99) | 0.0144 (99) | 0.00197 (97) | 0.0119 (99) |
Tajima’s D | ||||||
Senegal | −1.39 (78) | -0.132 (96) | 0.536 (98) | 0.298 (98) | −1.21 (84) | −0.494 (94) |
Malawi | −0.765 (94) | 0.519 (99) | 0.712 (99) | 0.257 (99) | −1.24 (89) | −0.868 (94) |
F ST | ||||||
Senegal–Malawi | 0.0512 (89) | 0.0163 (57) | 0.0576 (91) | 0.0322 (80) | 0.0236 (71) | 0.00716 (22) |
