Table 1 Fiebig stage, transmission route, days since infection, and number of T/F viruses of heterogeneously infected individuals

From: Tracking HIV-1 recombination to resolve its contribution to HIV-1 evolution in natural infection

Subject

Fiebig stage

Transmission route

Days from infection (95% CI)

No. of T/F viruses

CH0010

I/II

Heterosexual

9 (7, 11)

3

6

CH0078

I/II

Heterosexual

11 (7, 14)

2

2

CH0200

I/II

Heterosexual

15 (13, 17)

3

5

CH0047

III

Heterosexual

25 (21, 29)

2

2

CH0228

III

Heterosexual

24 (21, 28)

2

3

CH0275

I/II

Heterosexual

12 (8, 16)

1

2

CH0654

I/II

MSM

15 (13, 17)

9

8

CH1244

IV

Heterosexual

12 (11, 13)

NA

2

CH1754

III

Heterosexual

14 (12, 15)

6

7

  1. Days from infection were calculated using previously published methods33. These methods generally strongly correlate with Fiebig stage, though occasional deviations still happen, especially when under strong selection. In our present dataset, CH1244 is one such exception, with a Fiebig stage IV yet diversity that would be expected—under a model of random accumulation of mutation—to be roughly 2 weeks into the infection
  2. MSM men who have sex with men
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